These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTGAAAAGACCCTACAGAAACTGGTATCACTGACGCTCTGGCAAAGTACGTGAACGAGTTTGCCACCATGAGCGAGGAAAATGTGTTGGACAAGATGAAAAACAGTCCGGAATTTGTGCAGTGTGCGTCATGGAGCGAAATTCTCGACTCGGTCGGGTTTCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATTGCTCACACGGAGCAGTTTCCCAAACCGGAAAATGCAAACGGTGTTGATTTTCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTTATGAATCAAAGTACTCAGGATGCCCTGAAGAAGGTGTATGAGGAAACAGTGTTGCAAACGTCCAGGGCGGATCAAAAGGAAGAGATAGCCATACTACACGAGACACTGAAAACGATGCGCAATCCGGTACAGTCTAATGAACAGAATAGAATTGTGGACGACTTGAGGCGGTTGTTTGCCGACCCCAACATAAACCCTTTCCGCCTTCCGATTAATCAGATATGTTCGAATAACCCGTAAGCATAAAGAATAACACGCTGGTAGAACTTTTTCGGAAATAAACATGCA] [+] EMBL BX609295 [CCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTGAAAAGACCCTACAGAAACTGGTATCACTGACGCTCTGGCAAAGTACGTGAACGAGTTTGCCACCATGAGCGAGGAAAATGTGTTGGACAAGATGAAAAACAGTCCGGAATTTGTGCAGTGTGCGTCATGGAGCGAAATTCTCGACTCGGTCGGGTTTCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATTGCTCACACGGAGCAGTTTCCCAAACCGGAAAATGCAAACGGTGTTGATTTTCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTTATGAATCAAAGTACTCAGGATGCCCTGAAGAAGGTGTATGAGGAAACAGTGTTGCAAACGTCCAGGGCGGATCAAAAGGAAGAGATAGCCATACTACACGAGACACTGAAAACGATGCGCAATCCGGTACAGTCTAATGAACAGAATAGAATTGTGGACGACTTGAGGCGGTTGTTTGCCGACCCCAACATAAACCCTTTCCGCCTTCCGATTAATCAGATATGTTCGAATAACCCGTAAGCATAAAGAATAACACGCTGGTAGAACTTTTTCGGAAATAAACATGCA] consensusID : consensus_4273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CAGAATCGGCACGAGGNNATTTCGGGATGGATGCGCCAGCCAGCACAGAATCTCGACCAAAAAAACGCCCCAAAGCATCGAAAAAGCCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTTGAAAAGACCCTACAGAAACTGGGTATCACCGGGACGCTCTGGGCAAGTACGTGAAACGAGTTTGCCACCATNAGGCGAGGAAAATGTGTTGGGACAAGGATGAAAAACAGTCCGGGAATTTGTGCAAGTGTGCGGTCATGGGAGCGGAAATTCTTCGGACTCGGGTCGGGGTTTCCGCCGAAGAACGTGCAACAACGAGCTTACCGGCGTGGCGCTTNNAAGATCATTGGTTCACAACGGGAAGCAAGTTTTCCCAAAACCCGGGAAAATGCNCAAACCGGGTGTTGATTTTCAGCTGGCNTTGTATCTNGAAACCCTGGGCCAGGCGAGTGATTGAATTGGTGCAAACCGGAGTACGGGGTTATGGAACTCAACTGTAACTCAGGAGTGNCCCTNGAAGAACGGTGGTATGAGGAAACAGTGTTTGCCAAACAGT] [+] EMBL BX468750 [CAGAATCGGCACGAGGNNATTTCGGGATGGATGCGCCAGCCAGCACAGAATCTCGACCAAAAAAACGCCCCAAAGCATCGAAAAAGCCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAGACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTGCTCAAAACACGGAGGAAATTTGAAAAGACCCTACAGAAACTGGGTATCACCGGGACGCTCTGGGCAAGTACGTGAAACGAGTTTGCCACCATNAGGCGAGGAAAATGTGTTGGGACAAGGATGAAAAACAGTCCGGGAATTTGTGCAAGTGTGCGGTCATGGGAGCGGAAATTCTTCGGACTCGGGTCGGGGTTTCCGCCGAAGAACGTGCAACAACGAGCTTACCGGCGTGGCGCTTNNAAGATCATTGGTTCACAACGGGAAGCAAGTTTTCCCAAAACCCGGGAAAATGCNCAAACCGGGTGTTGATTTTCAGCTGGCNTTGTATCTNGAAACCCTGGGCCAGGCGAGTGATTGAATTGGTGCAAACCGGAGTACGGGGTTATGGAACTCAACTGTAACTCAGGAGTGNCCCTNGAAGAACGGTGGTATGAGGAAACAGTGTTTGCCAAACAGT] consensusID : consensus_4273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [CGTGAACGAGTGCGCCACCATGAGCGAGGAAAATGTGTGGGACAAGATGAAAAACAGTCCGGAATAAGTGCAGTGTGCGTCAGGGAGCGAAATACTCGACACGGTCGGGTGCCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATAGCTCACACGGAGCAGTACCCCAAACCGGAAAATGCAAACGGTGTGGAAACGCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTGATGAAACAAAGTACTCAGGAA] [+] EMBL BX608166 [CGTGAACGAGTGCGCCACCATGAGCGAGGAAAATGTGTGGGACAAGATGAAAAACAGTCCGGAATAAGTGCAGTGTGCGTCAGGGAGCGAAATACTCGACACGGTCGGGTGCCGCGAGACGTGCAACAACGAGCTACCGCTGGCGCTGCAAATCATAGCTCACACGGAGCAGTACCCCAAACCGGAAAATGCAAACGGTGTGGAAACGCAGCTGCTGTATCTGAACCTGGCCAGCATGATGATGGGGCAACCGATACGGGTGATGAAACAAAGTACTCAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4273#0 ------------------------------------------------------------ consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 CAGAATCGGCACGAGGNNATTTCGGGATGGATGCGCCAGCCAGCACAGAATCTCGACCAA 60 consensus_4273#0 --------------------------CCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAG 34 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 AAAAACGCCCCAAAGCATCGAAAAAGCCGCAAAGCTCCTCGAAAGGTGAATCTACCAAAG 120 consensus_4273#0 ACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTG 94 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 ACCGGACACCCAAATTCCAATCGGCGAGAAGTGTGTTCAATGCGTTTCAGAAGCATGGTG 180 consensus_4273#0 CTCAAAACACGGAGGAAATT-GAAAAGACCCTACAGAAACTGG-TATCACTG--ACGCTC 150 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 CTCAAAACACGGAGGAAATTTGAAAAGACCCTACAGAAACTGGGTATCACCGGGACGCTC 240 consensus_4273#0 TGGCAAAGTACGTGAA-CGAGTTTGCCACCATGAG-CGAGGAAAATGTGTTGG-ACAAG- 206 consensus_4273#2 ----------CGTGAA-CGAGTGCGCCACCATGAG-CGAGGAAAATGTGTGGG-ACAAG- 46 consensus_4273#1 TGGGCAAGTACGTGAAACGAGTTTGCCACCATNAGGCGAGGAAAATGTGTTGGGACAAGG 300 ****** ***** ******** ** ************** ** ***** consensus_4273#0 ATGAAAAACAGTCCGG-AATTTGTGCA-GTGTGCG-TCATGG-AGCG-AAATTCTC--GA 259 consensus_4273#2 ATGAAAAACAGTCCGG-AATAAGTGCA-GTGTGCG-TCAGGG-AGCG-AAATACTC--GA 99 consensus_4273#1 ATGAAAAACAGTCCGGGAATTTGTGCAAGTGTGCGGTCATGGGAGCGGAAATTCTTCGGA 360 **************** *** ***** ******* *** ** **** **** ** ** consensus_4273#0 CTCGG-TCGGG-----TTTCGCGAGACGTGCAACAACGAGCT-ACCGC--TGGCGCTGCA 310 consensus_4273#2 CACGG-TCGGG-----TGCCGCGAGACGTGCAACAACGAGCT-ACCGC--TGGCGCTGCA 150 consensus_4273#1 CTCGGGTCGGGGTTTCCGCCGAAGAACGTGCAACAACGAGCTTACCGGCGTGGCGCTTNN 420 * *** ***** ** ***************** **** ******* consensus_4273#0 AA--TCATTG-CTCACACGGAGCAG-----TTTCCCAAACC---GGAAAATGCA--AAC- 356 consensus_4273#2 AA--TCATAG-CTCACACGGAGCAG-----TACCCCAAACC---GGAAAATGCA--AAC- 196 consensus_4273#1 AAGATCATTGGTTCACAACGGGAAGCAAGTTTTCCCAAAACCCGGGAAAATGCNCAAACC 480 ** **** * ***** * * ** * ****** * ********* *** consensus_4273#0 -GGTGTTGATTTTCAGCTG---CTGTATCTGAA----CCTGGCCAGCATGATGATGGGGC 408 consensus_4273#2 -GGTGTGGAAACGCAGCTG---CTGTATCTGAA----CCTGGCCAGCATGATGATGGGGC 248 consensus_4273#1 GGGTGTTGATTTTCAGCTGGCNTTGTATCTNGAAACCCTGGGCCAGGCGAGTGATTGAAT 540 ***** ** ****** ******* * * ****** **** * consensus_4273#0 AACCG---ATACGGGTTATGAATCAAAGTACTCAGGATGCCCTGAAGAAGGTGTATGAGG 465 consensus_4273#2 AACCG---ATACGGGTGATGAAACAAAGTACTCAGGAA---------------------- 283 consensus_4273#1 TGGTGCAAACCGGAGTACGGGGTTATGGAACTCAACTGTAACTCAGGAGTGNCCCTNGAA 600 * * * ** * * * ***** consensus_4273#0 AAACAGTGTTGCAAACGTCCAGGGCGGATCAAAAGGAAGAGATAGCCATACTACACGAGA 525 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 GAACGGTGGTATGAGGAAACAGTGTTTGCCAAACAGT----------------------- 637 consensus_4273#0 CACTGAAAACGATGCGCAATCCGGTACAGTCTAATGAACAGAATAGAATTGTGGACGACT 585 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 TGAGGCGGTTGTTTGCCGACCCCAACATAAACCCTTTCCGCCTTCCGATTAATCAGATAT 645 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 GTTCGAATAACCCGTAAGCATAAAGAATAACACGCTGGTAGAACTTTTTCGGAAATAAAC 705 consensus_4273#2 ------------------------------------------------------------ consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 ATGCA 710 consensus_4273#2 ----- consensus_4273#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||