These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGACGAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGCATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTGTTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAGGGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCGCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCT] [+] EMBL BM586349 [CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGACGAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGCATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTGTTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAGGGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCGCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCT] consensusID : consensus_4279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [CCGCCCACGCGTCCGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCTCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCTGGCCGACGATCAGATACTGGA] [+] EMBL BM625943 [CCGCCCACGCGTCCGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCTCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCTGGCCGACGATCAGATACTGGA] consensusID : consensus_4279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [GCAAGAATCCCCCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTATACGGGCATNCGCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATATTGTCGCGTGCGCGGCAACAATCTGATTACAAGGTAACGCCCAACTGGCCACTTCCGCATCGTGCTGCGTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGGCAATTTCCGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTAAACGTTGGGGGAATTCTGGGGGGCCGAACGGTTCG] [+] EMBL AL930515 [GCAAGAATCCCCCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTATACGGGCATNCGCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATATTGTCGCGTGCGCGGCAACAATCTGATTACAAGGTAACGCCCAACTGGCCACTTCCGCATCGTGCTGCGTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGGCAATTTCCGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTAAACGTTGGGGGAATTCTGGGGGGCCGAACGGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4279#0 CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGAC 60 consensus_4279#1 ------------------------------------------------------------ consensus_4279#2 ------------------------------------------------------------ consensus_4279#0 GAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGC 120 consensus_4279#1 ------------------------------------------------------------ consensus_4279#2 ------------------------------------------------------------ consensus_4279#0 ATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTG 180 consensus_4279#1 ------------------------------------------------------------ consensus_4279#2 ------------------------------------------------------------ consensus_4279#0 TTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAG 240 consensus_4279#1 ------------------------------------------------------------ consensus_4279#2 ------------------------------------------------------------ consensus_4279#0 GGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTG 300 consensus_4279#1 -------------------------------------CCGCCCACGCGTCCGGGCAGCTG 23 consensus_4279#2 ------------------------------------------------------------ consensus_4279#0 CACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCG 360 consensus_4279#1 CACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCG 83 consensus_4279#2 ------------------------------------------------------------ consensus_4279#0 CTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTC 420 consensus_4279#1 CTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTC 143 consensus_4279#2 -------------------------------------------------GCAAGAATCCC 11 * * * consensus_4279#0 TGGCGCCAGAATCTGGAGCGCATGATCAA-CTTCCTGCGCCTGATCG-ATACGGGCATCC 478 consensus_4279#1 TGGCGCCAGAATCTGGAGCGCATGATCAA-CTTCCTGCGCCTGATCG-ATACGGGCATCC 201 consensus_4279#2 CCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTATACGGGCATNC 71 * * * **************** ********** * ********** * consensus_4279#0 GCGGGTACGTGAAGGACGCTCAG-GGTGCACCGCTG-CGCAAAGCGATACTG-CGCGTGC 535 consensus_4279#1 GCGGGTACGTGAAGGACGCTCAG-GGTGCACCGCTG-CTCAAAGCGATACTG-CGCGTGC 258 consensus_4279#2 GCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATATTGTCGCGTGC 131 *********************** ************ * ********** ** ******* consensus_4279#0 GCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGC 595 consensus_4279#1 GCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGC 318 consensus_4279#2 GCGGCAACAATCTGAT-TACAAGGTAACGCCCAACTGG--CCACTTCCGCATCGTGCTGC 188 **************** ****************** * ******************** consensus_4279#0 CGTCCGGCTCGATGGAGATCGAAATCAGCT--GCTA-CAACTACACCTCGCGCATCGTGC 652 consensus_4279#1 CGTCCGGCTCGATGGAGATCGAAATCAGCT--GCTA-CAACTACACCTCGCGCATCGTGC 375 consensus_4279#2 -GTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGGCAATTTC 247 *************************** **** *************** * * consensus_4279#0 CGA--TCACGCT------------------------------------------------ 662 consensus_4279#1 CGA--TCACGCTGGCCGACGATCAGATACTGGA--------------------------- 406 consensus_4279#2 CGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTAAACGTTG 307 ** * ** consensus_4279#0 ---------------------------- consensus_4279#1 ---------------------------- consensus_4279#2 GGGGAATTCTGGGGGGCCGAACGGTTCG 335 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||