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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence
[CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCCCACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATTGTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAAT-CCATTTGAAGCTGCTGG-AAATGAT-CCGGTAGATGAATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG]
[+] EMBL BM591602 [CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCCCACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATTGTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAAT CCATTTGAAGCTGCTGG AAATGAT CCGGTAGATG ]
[-] EMBL BM599459 [ TTA GGTGGATTCGGCCGGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCCATTTGAAGCTGCTGGAAAATGATCCCGGTAGATGAATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG]
consensusID : consensus_4288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCTGTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGATTCTTGGCCTCG]
[-] EMBL BX467959 [GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCTGTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGATTCTTGGCCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4288#0 CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCC 60
consensus_4288#1 ----------------------------------------------GTAGCATATATAAC 14
*** * * *
consensus_4288#0 CACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATT 120
consensus_4288#1 CGCAGGCATG-CGAACGGGTCGTCTCTGACCAGAGGATACGTG-TGCTGTAGTTGTGATT 72
* * ** ** * ** * ** * * * *** * ** **********
consensus_4288#0 G-TGTTGTTGTA-TCGATGCATCA-ACACCACCCCATCCCATCTTTGAGACAGGCAAGCG 177
consensus_4288#1 GCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCG 132
* ********** *********** ***********************************
consensus_4288#0 GCACGCAATGGAGAA-TATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCA 236
consensus_4288#1 GCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCA 192
************** ********************************************
consensus_4288#0 ACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACT 296
consensus_4288#1 ACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACT 252
************************************************************
consensus_4288#0 TATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGT 356
consensus_4288#1 TATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGT 312
************************* ****************************** ***
consensus_4288#0 ATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCG 416
consensus_4288#1 ATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCG 372
************************************************************
consensus_4288#0 CCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCG 476
consensus_4288#1 CCAGCCAGCCGA-TCATTCGCGC----ATCTAGTGTCCGGACCATTTTTGCGACCAGCCG 427
***** **** * ********** *********************************
consensus_4288#0 CCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGG 536
consensus_4288#1 CCGTGCTTCTCATGTT--CCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGG 485
**************** ******************************************
consensus_4288#0 ATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCA 596
consensus_4288#1 ATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGG-TGGATTCGGCCCGCTGGGTCCA 544
********************** ************** *** ******************
consensus_4288#0 GAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGGAAATGATCCGGTAGATGA 656
consensus_4288#1 GAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTG-AAACCATCGTGCCGATTC 603
***************************************** *** *** * ***
consensus_4288#0 ATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG 711
consensus_4288#1 TTGGCCTCG---------------------------------------------- 612
** ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||