These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 982 fasta sequence [GAAGACGAGGAGGAGGAGGAGGACGATTTGAACAATGACAATGAGGGGCAACCGGTGTCCAGCAGGAAGCGCATCAAGAAAAGCAGAAAAGATAAGAAGCATAAGCGAAACAAAAAACTAAAAAAGCGCAAGAAAAAATATCGCACCAAGTCAATATCGAGCATTGAGACGATCTCGGAGAGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGAGCTGGTAGTGGTGAAGGTAGTAAATCTTACACTCCTGTTCACAACGACACCAGCCTTACGCCCGTGTCACCAGGAACTCCACCACTGCTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGCCGTAGTCCAATTGAGCGTGATTGTGACCACGATCGCGAACGGGAACGGGAACGTGATCCACGGGATCGAGACCGTTCAGCAAATGCTGGCGGAAGCACCACTGGCCGCAAACTGTATATTACTTCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGATCGTACGCTGCCACAGAACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTTGCGCCACAGANGAAGCAGCAGCCATCGAGCAAATAGTCGGCGTCGCAGTCAATCAAACGATCGGAGGTACAGCTCCAGGCGAACGCCTTCTCCAAACGAACGTCACAAACCACACACTCCACCACCCACGAAACGTCGGCGAGACAGATCTCCGCCCGAGAAGGACTATTATCGGAAAACGGATAGCCGGAGTTACAGTAAACGAGAGAGAGACTGGGATGATCGTCGCGGCAGTGAAGCCAGCAAGCGTTATGGAAGAACTNCAAGTCCCAATAGCAATCGCCGNTCTCGACGGTCACCTTCGCTTACCATAACGAGCAGGTCTAGATCATCGCGCAGGGGAN] [+] EMBL BX627917 [GAAGACGAGGAGGAGGAGGAGGACGATTTGAACAATGACAATGAGGGGCAACCGGTGTCCAGCAGGAAGCGCATCAAGAAAAGCAGAAAAGATAAGAAGCATAAGCGAAACAAAAAACTAAAAAAGCGCAAGAAAAAATATCGCACCAAGTCAATATCGAGCATTGAGACGATCTCGGAGAGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGAGCTGGTAGTGGTGAAGGTAGTAAATCTTACACTCCTGTTCACAACGACACCAGCCTTACGCCCGTGTCACCAGGAACTCCACCACTGCTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGCCGTAGTCCAATTGAGCGTGATTGTGACCACGATCGCGAACGGGAACGGGAACGTGATCCACGGGATCGAGACCGTTCAGCAAATGCTGGCGGAAGCACCACTGGCCGCAAACTGTATATTACTTCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGATCGTACGCTGCCACAGAACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTTGCGCCACAGANGAAGCAGCAGCCATCG ] [+] EMBL BX623208 [ ATCTCGGAGAGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGAGCTGGTAGTGGTGAAGGTAGTAAATCTTACACTCCTGTTCACAACGACACCAGCCTTACGCCCGTGTCACCAGGAACTCCACCACTGCTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGCCGTAGTCCAATTGAGCGTGATTGTGACCACGATCGCGAACGGGAACGTGAACGTGATCCACGGGATCGAGACCGTTCAGCAAATGCTGGCGGAAGCACCACTGGCCGCAAACTGTATATTACTTCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGATCGTACACTGCCGCAGAACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTTGCGCCACAGAGGAAGCAGCAGCCATCGAGCAAATAGTCGGCGTCGCAGTCAATCAAACGATCGGAGGTACAGCTCCAGGCGAACGCCTTCTCCAAACGAACGTCACAAACCACACACTCCACCACCCACGAAACGTCGGCGAGACAGATCTCCGCCCGAGAAGGACTATTATCGGAAAACGGATAGCCGGAGTTACAGTAAACGAGAGAGAGACTGGGATGATCGTCGCGGCAGTGAAGCCAGCAAGCGTTATGGAAGAACTNCAAGTCCCAATAGCAATCGCCGNTCTCGACGGTCACCTTCGCTTACCATAACGAGCAGGTCTAGATCATCGCGCAGGGGAN] consensusID : consensus_4291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CAGAATCGCGCACGAGNGGTAGTAAATCCTTACACTCCGTGTTTCACAAACGACACCAGTCCTTACGCCCGTGATCACCAGGAAGCTCCACCACTGCTTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGGTCGTAGTCCAATTGAGCGTAGATTGTGACCACGATCGCGAACGGGAACGGGAACGTTGATCCACGGGGATCGGAGAACCGTTTCAAGCGAAATGCTAGGGCGGAAGNCACCCACTGGNCGGAAGACTTGTNTATTTACCTTTCTTTCAAACCTCCACACTACCCTGNCTGGTTCTGACCATAGGCAATATGAGACAACACGGACTTTCGGTCTATCTTTAACCCAATGAATCCGTACCGNCCTTGGCNAACAAGGAAACCAACNTGAAAGGTNCTCCCGAATTTTGGAATTCCTGTGGGAAATTAAGCGCNACCGGNGAACGGGCCCTTGGATTTGGTTTATTGGCCCGGCCGCCANGCTTAANGAAGGGGGAACAAGAGCCCAAGGCGGAAGTTCGCACNGAGTTCACGTAAGGGCCAACACAGATTTTAAGGNTTCCGGGGACCGGTTNCTGTGCGAGGTCCAAGGTGTCCACN] [+] EMBL BX468838 [CAGAATCGCGCACGAGNGGTAGTAAATCCTTACACTCCGTGTTTCACAAACGACACCAGTCCTTACGCCCGTGATCACCAGGAAGCTCCACCACTGCTTGGAACATCATTCTACGAGGCATTCGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGGTCGTAGTCCAATTGAGCGTAGATTGTGACCACGATCGCGAACGGGAACGGGAACGTTGATCCACGGGGATCGGAGAACCGTTTCAAGCGAAATGCTAGGGCGGAAGNCACCCACTGGNCGGAAGACTTGTNTATTTACCTTTCTTTCAAACCTCCACACTACCCTGNCTGGTTCTGACCATAGGCAATATGAGACAACACGGACTTTCGGTCTATCTTTAACCCAATGAATCCGTACCGNCCTTGGCNAACAAGGAAACCAACNTGAAAGGTNCTCCCGAATTTTGGAATTCCTGTGGGAAATTAAGCGCNACCGGNGAACGGGCCCTTGGATTTGGTTTATTGGCCCGGCCGCCANGCTTAANGAAGGGGGAACAAGAGCCCAAGGCGGAAGTTCGCACNGAGTTCACGTAAGGGCCAACACAGATTTTAAGGNTTCCGGGGACCGGTTNCTGTGCGAGGTCCAAGGTGTCCACN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4291#0 GAAGACGAGGAGGAGGAGGAGGACGATTTGAACAATGACAATGAGGGGCAACCGGTGTCC 60 consensus_4291#1 ------------------------------------------------------------ consensus_4291#0 AGCAGGAAGCGCATCAAGAAAAGCAGAAAAGATAAGAAGCATAAGCGAAACAAAAAACTA 120 consensus_4291#1 ------------------------------------------------------------ consensus_4291#0 AAAAAGCGCAAGAAAAAATATCGCACCAAGTCAATATCGAGCATTGAGACGATCTCGGAG 180 consensus_4291#1 ------------------------------------------------------------ consensus_4291#0 AGTGAAGGTTCCCTGCTGGAGTCAATGACGCCGCCATTAAAACAATCTCCAGGATATAGA 240 consensus_4291#1 --------------------------------------------------------CAGA 4 *** consensus_4291#0 GCTGGTAGTGGTGAAGGTAGTAAATC-TTACACTCC-TGTT-CACAA-CGACACCAG-CC 295 consensus_4291#1 ATCGC--GCACGAGNGGTAGTAAATCCTTACACTCCGTGTTTCACAAACGACACCAGTCC 62 * * *********** ********* **** ***** ********* ** consensus_4291#0 TTACGCCCGTG-TCACCAGGAA-CTCCACCACTGCT-GGAACATCATTCTACGAGGCATT 352 consensus_4291#1 TTACGCCCGTGATCACCAGGAAGCTCCACCACTGCTTGGAACATCATTCTACGAGGCATT 122 *********** ********** ************* *********************** consensus_4291#0 CGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAG-CCGTAGTCCAATTGAG 411 consensus_4291#1 CGTTAAACAGTCCTTACGATAGCCGTGCGATCGTTACGCGAAGGTCGTAGTCCAATTGAG 182 ******************************************* *************** consensus_4291#0 CGT-GATTGTGACCACGATCGCGAACGGGAACGGGAACGT-GATCCACGGG-ATCGAG-- 466 consensus_4291#1 CGTAGATTGTGACCACGATCGCGAACGGGAACGGGAACGTTGATCCACGGGGATCGGAGA 242 *** ************************************ ********** **** consensus_4291#0 ACCGTTC--AGC-AAATGCT--GGCGGAAGCA--CCACTGGCCGCAAACTGTATATTACT 519 consensus_4291#1 ACCGTTTCAAGCGAAATGCTAGGGCGGAAGNCACCCACTGGNCGGAAGACTTGTNT-ATT 301 ****** *** ******* ******** ******* ** ** * * * * * consensus_4291#0 TCTTCACCTCACACACCGCCTGTCGCCATGCATAAAAAGACTTCGTCATCTTACCATGAT 579 consensus_4291#1 TACCTTTCTTTCAAACCTCC-----------------ACACTACCCTGNCTGGTTCTGAC 344 * ** ** *** ** * *** * ** *** consensus_4291#0 CGTACGCTGCCACAGA-ACCACGGCAGCCCCATTGATCTTGATAGCCCGCCGCCTGTGTT 638 consensus_4291#1 CATAGGCAATATGAGACAACACGGACTTTCGGTCTATCTT--TAACCCAATGAATCCGTA 402 * ** ** *** * ***** * * ***** ** *** * * ** consensus_4291#0 GCGCCACAGANGAAGCAGCAGCCATCGAGCAAATAGTCGGCGTCGCAGTCAATCAAACG- 697 consensus_4291#1 CCGNCCTTGGCNAACAAGGAA--ACCAACNTGAAAGGTNCTCCCGAATTTTGGAATTCCT 460 ** * * ** ** * * * * * ** ** * * * * consensus_4291#0 ATCGGAGGTACAGCTCCA--GGCGAACGCCTTCTCCAAACGAACGTCACAAACCACACAC 755 consensus_4291#1 GTGGGAAATTAAGCGCNACCGGNGAACGGGCCCTTGGATTTGGT-TTATTGGCC-CGGCC 518 * *** * *** * * ** ***** ** * * * ** * * consensus_4291#0 TCCACCACCCACGAAACGTCGGCGAGACAGATCTCCGCCCGAGAAGGACTATTATCGGAA 815 consensus_4291#1 GCCANGCTTAANGAAGGGGGAACAAGA---------GCCCAAGGCGGAA-GTTCGCACNG 568 *** * *** * * *** **** ** *** ** * consensus_4291#0 AACGGATAGCCGGAGTTACAGTAAACGAGAGAGAGACTGGGATGATCGTCGCGGCAGTGA 875 consensus_4291#1 AGTTCAC-GTAAGGGCCAACACAGATTTTAAGGNTTCCGGG--GACCGGTTNCTGTGCGA 625 * * * * * * * * * * * *** ** ** * ** consensus_4291#0 AGCCAGCAAGCGTTATGGAAGAACTNCAAGTCCCAATAGCAATCGCCGNTCTCGACGGTC 935 consensus_4291#1 GGTCCA-AGGTGTCCACN------------------------------------------ 642 * * * * ** consensus_4291#0 ACCTTCGCTTACCATAACGAGCAGGTCTAGATCATCGCGCAGGGGAN 982 consensus_4291#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||