These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGACCGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTTGGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATAAAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCATCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACCACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGTTGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCATTCGTCATCCCGTACCTGATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCATGCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGCGTCGGTGCTGGCCGTCACCCTGCGGTACCTGGTTGCCTCGTTCAATCCCGAGCTGCCCTGGGCTAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATTGCCCTTGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACGGTAATGCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCACTATGCCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGCTCCGGCAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT] [+] EMBL BM595852 [CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGACCGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTTGGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATAAAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCATCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACCACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGTTGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCATTCGTCATCCCGTACCTGATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCATGCGTGGTATCGGT ] [+] EMBL BM589455 [ ccgAAGCACCCCAATCCACCACCGCCAGCGACGAAAAGCCACCACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGTGGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCGTTCGTCATCCCGTACCTAATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCATGCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGCGTCGGTGCTGGCCGTCACCCTGCGGTACCTGGTTGCCTCGTTCAATCCCGAGCTGCCCTGGGCTAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATTGCCCTTGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACGGTAATGCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCACTATGCCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGCTCCGGCAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT] consensusID : consensus_4295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [CGACCCACGCGTCCGCGCGGCACAAGCAAACGCGCGAAACCACAAGACAAGACCAAGAAAGTGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTGCGAGAGAAGGGCCACACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCAACGACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTGATGAAACCTGGAATGCCGACACGCTGCCGGTCGGGGGACTTGCGGGCAACCAGCCCCACCACCACCACAACCATCATCATAAGCATCACACTACGGTCGATCTGAAAGCACCCCAATCCACCACCGCCAGCGACGAAAA] [+] EMBL BM601471 [CGACCCACGCGTCCGCGCGGCACAAGCAAACGCGCGAAACCACAAGACAAGACCAAGAAAGTGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTGCGAGAGAAGGGCCACACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCAACGACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTGATGAAACCTGGAATGCCGACACGCTGCCGGTCGGGGGACTTGCGGGCAACCAGCCCCACCACCACCACAACCATCATCATAAGCATCACACTACGGTCGATCTGAAAGCACCCCAATCCACCACCGCCAGCGACGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4295#0 CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGAC 60 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 CGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTT 120 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 GGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATA 180 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 AAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCA 240 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 TCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACC 300 consensus_4295#1 ---------------------------------------------------CGACCCACG 9 * **** consensus_4295#0 ACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGT 360 consensus_4295#1 CGTCCGCGCGGCACAAG----CAAACGCGCGAAACCACAAGACAA----GACCAAGAAAG 61 * ** * * * * *** ** * * ** * * ** consensus_4295#0 TGGCTTCGGCAATGTGTGGCGCTTCCCGTACACA-GCGTTCAAGAACGGTGGCGGTGCAT 419 consensus_4295#1 TGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTG-CGAGAGAA 120 ** ***** * ** * * ** ** **** ****** *** ** * consensus_4295#0 TCGTCATCCCGTACCTGATTGTACTGTTCATCAT-CGGACGCCCGATCTACTATCTGGAG 478 consensus_4295#1 GGGCCA-CACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCA 179 * ** * ** ** * ** ** * *** * * * ** consensus_4295#0 ATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCAC-CTGC 537 consensus_4295#1 ACG--ACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTG-ATGAAACCTGGAATGCCGA 236 * * * * * * ** ** * * *** * * **** * * * * consensus_4295#0 CATGCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGC 597 consensus_4295#1 CACGCTGCCGGTCGGGG--GACTTGCGGGCAACCAGCCCCACCACCACCACA-ACCAT-C 292 ** ** **** * * ** *** * **** ** *** ** ** * consensus_4295#0 GTCGGTGCTGGCCGTCACCCTGCGGT--ACCTGGTTGCCTCGTTCAATCCCGAGCTGCCC 655 consensus_4295#1 ATCA----TAAGCATCACACTACGGTCGATCTGAAAGCACC--CCAATCCACCACCGCCA 346 ** * * **** ** **** * *** ** * ****** * *** consensus_4295#0 TGGGCTAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATT 715 consensus_4295#1 GCGACGAAAA-------------------------------------------------- 356 * * ** consensus_4295#0 GCCCTTGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACG 775 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 GTAATGCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCA 835 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 CTATGCCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGC 895 consensus_4295#1 ------------------------------------------------------------ consensus_4295#0 TCCGGCAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT 942 consensus_4295#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||