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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1040 fasta sequence
[ATCTTTGGATAAGTATTTTTTTGTTTTCTATTTCGCTGCACGAAGGAAGCGCACCAGAGCATCACACGCATCATTTCTGGGCATGTTTAGTATATGAATACAACACACACACACACACACACACACACACATACACACCGGTTGGCATATTTTGTGTACGCAAACGCAATACTCTTTTTCTATTCACTCCAAAGCGGAGTCGCGTAAATCAGGGTTTTAGGATGACTAGGAAACACAGGATGTGCTAGCAAAATGACTCACACATACACACACACACACACATACAGATACGATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTCCCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTACAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGGTTAGGAAGGAAGGACAAA-CGCTACTATTATTAGATGCTATTGTCAAAGTCATGTCTCATGTCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTTCTGTAAGAACAAAAGTAACGCTAGACAAAAACAAAGGGAAATAATTCAACACATACTCTGCAGCGTGGGGGAATGGGGGATATGGGGGTACACTACCAGTGAGAATAAAGCAAGCAAGGTCC--GGATTTCTATTTCCGGGCCAGTGTGGAGTGATTTGCCGAACCGATCAAACGCCGCGCGCATGTAGAAATGATTAAAGATTGAGCACAAAGCAAAAGTTAAGTACCCTTCCCCGTCTCCCCATCACTCCTCCTCTCCCGTAACGGTTGGATAATTCCATCCAATTGATATCTAACTCCAGGCAATATACAGTAGACGTATGTAAACATTGCACACACAACCCGTGCTCAAAAATATCGTGAATGTCCCTCATTTAGTGTGTTAGCAGGTAGTGCGCGTAGTTTGGCCGTTGAACCTATTTACCGTATTTAGCTGTGTAAGAATGTGGGAGAAGAAGAAAGTATACCTTT]
[+] EMBL BX620495 [ATCTTTGGATAAGTATTTTTTTGTTTTCTATTTCGCTGCACGAAGGAAGCGCACCAGAGCATCACACGCATCATTTCTGGGCATGTTTAGTATATGAATACAACACACACACACACACACACACACACACATACACACCGGTTGGCATATTTTGTGTACGCAAACGCAATACTCTTTTTCTATTCACTCCAAAGCGGAGTCGCGTAAATCAGGGTTTTAGGATGACTAGGAAACACAGGATGTGCTAGCAAAATGACTCACACATACACACACACACACACATACAGATACGATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTCCCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTACAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGGTTAGGAAGGAAGGACAAA CGCTACTATTATTAGATGCTATTGTCAAAGTCATGTCTCATGTCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTTCTGTAAGAACAAAAGTAACGCTAGACAAAAACAAAGGGAAATAATTCAACACATACTCTGCAGCGTGGGGGAATGGGGGATATGGGGGTACACTACCAGTGAGAATAAAGCAAGCAAGGTCC GGATTTCTATTTCCGGGCCAGTGTGGAGTGATTTGCCG ]
[+] EMBL BX607577 [ tACACACATACAGATACGATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTCCCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTACAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGGTT AGGAAGGACAAACCGCTACTATTATTAGATGCTATTGTCAAACTCATGTCTCATGTCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTTCTGTAAGAACAAAAGTAACGCTAGACAAAAACAAAGGGAAATAATTCAACACACACTCTGCAGCGTGGGGGAATGGGGGATAT GGGTACACTACCAGTGAGAATAAAGCAAGCAAGGTCCCTGGGTTTCTATTTCCGGGCCAGTGTGGAGTGATTTGCCGAACCGATCAAACGCCGCGCGCATGTAGAAATGATTAAAGATTGAGCACAAAGCAAAAGTTAAGTACCCTTCCCCGTCTCCCCATCACTCCTCCTCTCCCGTAACGGTTGGATAATTCCATCCAATTGATATCTAACTCCAGGCAATATACAGTAGACGTATGTAAACATTGCACACACAACCCGTGCTCAAAAATATCGTGAATGTCCCTCATTTAGTGTGTTAGCAGGTAGTGCGCGTAGTTTGGCCGTTGAACCTATTTACCGTATTTAGCTGTGTAAGAATGTGGGAGAAGAAGAAAGTATACCTTT]
consensusID : consensus_4326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[CCGATAGCGATCTTTGGATAAGTATTTTTTTGTTTTCTATTTCGCTGCACGAAGGAAGCGCACCAGAGCATCACACGCATCATTTCTGGGCATGTTTAGTATATGAATACAACACACACACACACACACACACACACACATACACACCGGTTGGCATATTTTGTGTACGCAAACGCAATACTCTTTTTCTATTCACTCCAAAGCGGAGTCGCGTAAATCAGGGTTTTAGGATGACTAGGAAACACAGGATGTGCTAGCAAAATGACTCACACATACACACACACACACACATACAGATACGATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTCCCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTACAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGGTTAGGAAGGAAGGACAACGCTACTATTATTAGATGCTATTGTCAAACTCATGTCTCATGTCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTTTCTGGAAGAACCAAAAGTAACGCTAGGACCAAAAACCAAAAGGGAAATAATTTCCAACACCATACTTCTGGCAACCGTGGGGGGGAATGGGGGGGAATATTGGGGGGGTAACCCCTTACCCGGGGGAAAAAATAAAAGGCAGGCCAAAGGGGCCCGGGAATATTCTTAATTTTTCCGGGGCCCCCACTGGGGGGGAAATGGAATAT]
[+] EMBL BM657642 [CCGATAGCGATCTTTGGATAAGTATTTTTTTGTTTTCTATTTCGCTGCACGAAGGAAGCGCACCAGAGCATCACACGCATCATTTCTGGGCATGTTTAGTATATGAATACAACACACACACACACACACACACACACACATACACACCGGTTGGCATATTTTGTGTACGCAAACGCAATACTCTTTTTCTATTCACTCCAAAGCGGAGTCGCGTAAATCAGGGTTTTAGGATGACTAGGAAACACAGGATGTGCTAGCAAAATGACTCACACATACACACACACACACACATACAGATACGATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTCCCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTACAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGGTTAGGAAGGAAGGACAACGCTACTATTATTAGATGCTATTGTCAAACTCATGTCTCATGTCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTTTCTGGAAGAACCAAAAGTAACGCTAGGACCAAAAACCAAAAGGGAAATAATTTCCAACACCATACTTCTGGCAACCGTGGGGGGGAATGGGGGGGAATATTGGGGGGGTAACCCCTTACCCGGGGGAAAAAATAAAAGGCAGGCCAAAGGGGCCCGGGAATATTCTTAATTTTTCCGGGGCCCCCACTGGGGGGGAAATGGAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4326#0 ---------ATCTTTGGATAAGTATTTTTTTGTTTTCTATTTCGCTGCACGAAGGAAGCG 51
consensus_4326#1 CCGATAGCGATCTTTGGATAAGTATTTTTTTGTTTTCTATTTCGCTGCACGAAGGAAGCG 60
***************************************************
consensus_4326#0 CACCAGAGCATCACACGCATCATTTCTGGGCATGTTTAGTATATGAATACAACACACACA 111
consensus_4326#1 CACCAGAGCATCACACGCATCATTTCTGGGCATGTTTAGTATATGAATACAACACACACA 120
************************************************************
consensus_4326#0 CACACACACACACACACACATACACACCGGTTGGCATATTTTGTGTACGCAAACGCAATA 171
consensus_4326#1 CACACACACACACACACACATACACACCGGTTGGCATATTTTGTGTACGCAAACGCAATA 180
************************************************************
consensus_4326#0 CTCTTTTTCTATTCACTCCAAAGCGGAGTCGCGTAAATCAGGGTTTTAGGATGACTAGGA 231
consensus_4326#1 CTCTTTTTCTATTCACTCCAAAGCGGAGTCGCGTAAATCAGGGTTTTAGGATGACTAGGA 240
************************************************************
consensus_4326#0 AACACAGGATGTGCTAGCAAAATGACTCACACATACACACACACACACACATACAGATAC 291
consensus_4326#1 AACACAGGATGTGCTAGCAAAATGACTCACACATACACACACACACACACATACAGATAC 300
************************************************************
consensus_4326#0 GATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTC 351
consensus_4326#1 GATTCTGTTCAACAAAAAGGATATGCGCAATAGGAGGTGGTGGATTCATCCTCCCTTCTC 360
************************************************************
consensus_4326#0 CCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTA 411
consensus_4326#1 CCTTACCGCACACAGTAGTAGTATTGCGGGCGTATGTTGTGTGCCAAAGGAATAACACTA 420
************************************************************
consensus_4326#0 CAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGG 471
consensus_4326#1 CAACAGCGCTTGTCTTGTTTAGCTGCACTTTATTTACTCTGTACACGTTAGGCTTTTTGG 480
************************************************************
consensus_4326#0 TTAGGAAGGAAGGACAAACGCTACTATTATTAGATGCTATTGTCAAAGTCATGTCTCATG 531
consensus_4326#1 TTAGGAAGGAAGGACAA-CGCTACTATTATTAGATGCTATTGTCAAACTCATGTCTCATG 539
***************** ***************************** ************
consensus_4326#0 TCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTT-CTGTAAGAAC-AAAAGTAAC 589
consensus_4326#1 TCATACACTCCGCCAGATACACTCCGAAATGCTAGTTTTTCTGGAAGAACCAAAAGTAAC 599
*************************************** *** ****** *********
consensus_4326#0 GCTAGA--CAAAAAC--AAAGGGAAATAATTCAACACATACTCTGCAGCGTGGGGGAATG 645
consensus_4326#1 GCTAGGACCAAAAACCAAAAGGGAAATAATTT--CCAACACCATACTTCTGGCAACCGTG 657
***** ******* ************** * * ** * * * * **
consensus_4326#0 GGGGATATGGGGGTACACTACCAGTGAGAATAAAGCAAGCAAGGTCCGGATTTCTATTTC 705
consensus_4326#1 GGGGGGAATGGGGGGGAATATTGGGGGGGTAACCCCTTACCCGGGGGAAAAAATAAAAGG 717
**** * **** * ** * * * * * * ** * *
consensus_4326#0 CGGGCCAGTGTGG---AGTGATTTGCCGAACCGATCAAACGCCGCGCGCATGTAGAAATG 762
consensus_4326#1 CAGGCCAAAGGGGCCCGGGAATATTCTTAATTTTTCCGGGGCCCC-CAC-TGGGGGGGAA 775
* ***** * ** * ** * * ** ** *** * * * ** *
consensus_4326#0 ATTAAAGATTGAGCACAAAGCAAAAGTTAAGTACCCTTCCCCGTCTCCCCATCACTCCTC 822
consensus_4326#1 ATGGAATAT--------------------------------------------------- 784
** ** **
consensus_4326#0 CTCTCCCGTAACGGTTGGATAATTCCATCCAATTGATATCTAACTCCAGGCAATATACAG 882
consensus_4326#1 ------------------------------------------------------------
consensus_4326#0 TAGACGTATGTAAACATTGCACACACAACCCGTGCTCAAAAATATCGTGAATGTCCCTCA 942
consensus_4326#1 ------------------------------------------------------------
consensus_4326#0 TTTAGTGTGTTAGCAGGTAGTGCGCGTAGTTTGGCCGTTGAACCTATTTACCGTATTTAG 1002
consensus_4326#1 ------------------------------------------------------------
consensus_4326#0 CTGTGTAAGAATGTGGGAGAAGAAGAAAGTATACCTTT 1040
consensus_4326#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||