These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 927 fasta sequence [CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT] [+] EMBL BM638896 [CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACG ] [+] EMBL BX626445 [ ACCTGGGTACAAGAAACCCCNCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGG AGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT] consensusID : consensus_4328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG] [+] EMBL BX469637 [ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4328#0 CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTG---ATCTTGGCAAGCTGCAACTGCC 57 consensus_4328#1 -------------------------ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCC 35 ** ** * ********************** consensus_4328#0 -GGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAA 116 consensus_4328#1 CGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAA 95 *********************************************************** consensus_4328#0 ATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGT 176 consensus_4328#1 ATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGT 155 ************************************************************ consensus_4328#0 TTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACA 236 consensus_4328#1 TTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACA 215 ************************************************************ consensus_4328#0 AGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGG 296 consensus_4328#1 AGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGG 275 ************************************************************ consensus_4328#0 TCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGA-TGCACAG 355 consensus_4328#1 TCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAG 335 **************************************************** ******* consensus_4328#0 TGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGG-TCCTGTTCGG 414 consensus_4328#1 TGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGG 395 ************************************************* ********** consensus_4328#0 CGGGCTGTAC-TGGTTGATCTCG-TACACGCACGG-CGATCTGGATGAGAATC-ACTTGC 470 consensus_4328#1 CGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGC 455 ********** ************ *********** ***************** ****** consensus_4328#0 CACCGTTGCAAGGCGACAACAACTGGACGCCATG-CATTTCGAACATCTACTCGTTCACG 529 consensus_4328#1 CACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACG 515 ********************************** ************************* consensus_4328#0 TCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATG 589 consensus_4328#1 GTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGG-CAAGNAC--ACCGAAATCGGGG 572 * * * * * * * * *** * * ** * ** * * consensus_4328#0 GAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGAT 649 consensus_4328#1 GTACCGGGAATCGCGGCGGNC--CATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGG 630 * * ** * * * * * ** * * ** **** * * ** * consensus_4328#0 GGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGC 709 consensus_4328#1 GTTACGG---TAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGA---ATGG 684 * * * * * * ** ** ** ** * * * * * * * consensus_4328#0 TCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCT 769 consensus_4328#1 TC-GACAAGGCTTTCCCTAGAGGG------------------------------------ 707 ** *** ** * * * ** consensus_4328#0 GATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCA 829 consensus_4328#1 ------------------------------------------------------------ consensus_4328#0 GCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTG 889 consensus_4328#1 ------------------------------------------------------------ consensus_4328#0 GAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT 927 consensus_4328#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||