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Anopheles gambiae
cluster # 4328 cluster # 4328       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4328#0 length = 927 sequences # 2  
consensus_4328#1 length = 707 sequences # 1  

consensusID : consensus_4328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 927
fasta sequence
                              [CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT]

[+] EMBL BM638896             [CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACG                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX626445             [                                                                                                                                                                                                                                 ACCTGGGTACAAGAAACCCCNCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGG AGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT]


>consensus_4328#0 CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGA AGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGA TAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCG GTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAA ACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCC GCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCG TTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCT GTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCA AGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCT GTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGT GTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCT TCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTC TCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCA TCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGG CGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTC GGACGACTGCTCGTCGGATGTGTTTTT



consensusID : consensus_4328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence
                              [ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG]

[+] EMBL BX469637             [ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG]


>consensus_4328#1 ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATT GCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTT AACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTC GGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTT TAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCT ACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTG CGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGT ACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTG GACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGG CTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGA GGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCC CGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4328#0      CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTG---ATCTTGGCAAGCTGCAACTGCC 57
consensus_4328#1      -------------------------ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCC 35
                                               **    ** *   **********************

consensus_4328#0      -GGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAA 116
consensus_4328#1      CGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAA 95
                       ***********************************************************

consensus_4328#0      ATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGT 176
consensus_4328#1      ATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGT 155
                      ************************************************************

consensus_4328#0      TTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACA 236
consensus_4328#1      TTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACA 215
                      ************************************************************

consensus_4328#0      AGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGG 296
consensus_4328#1      AGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGG 275
                      ************************************************************

consensus_4328#0      TCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGA-TGCACAG 355
consensus_4328#1      TCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAG 335
                      **************************************************** *******

consensus_4328#0      TGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGG-TCCTGTTCGG 414
consensus_4328#1      TGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGG 395
                      ************************************************* **********

consensus_4328#0      CGGGCTGTAC-TGGTTGATCTCG-TACACGCACGG-CGATCTGGATGAGAATC-ACTTGC 470
consensus_4328#1      CGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGC 455
                      ********** ************ *********** ***************** ******

consensus_4328#0      CACCGTTGCAAGGCGACAACAACTGGACGCCATG-CATTTCGAACATCTACTCGTTCACG 529
consensus_4328#1      CACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACG 515
                      ********************************** *************************

consensus_4328#0      TCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATG 589
consensus_4328#1      GTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGG-CAAGNAC--ACCGAAATCGGGG 572
                          *     *  *     *     * * * * ***  *  * **  * **    *   *

consensus_4328#0      GAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGAT 649
consensus_4328#1      GTACCGGGAATCGCGGCGGNC--CATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGG 630
                      * *    ** *  * *  * *    ** * *   **       **** * * **   *  

consensus_4328#0      GGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGC 709
consensus_4328#1      GTTACGG---TAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGA---ATGG 684
                      * * *     *   * *   ** **   **  **  *    *  * * *  *      * 

consensus_4328#0      TCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCT 769
consensus_4328#1      TC-GACAAGGCTTTCCCTAGAGGG------------------------------------ 707
                      ** ***    ** * *  * **                                      

consensus_4328#0      GATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCA 829
consensus_4328#1      ------------------------------------------------------------
                                                                                  

consensus_4328#0      GCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTG 889
consensus_4328#1      ------------------------------------------------------------
                                                                                  

consensus_4328#0      GAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT 927
consensus_4328#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)