These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence [ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGACAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCGGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCAGCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCAGCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGCTTCCGTTTGGGCGCCGGAG-TGTATGGAGGTGCCCGACCCGGTACCGGTATTGGTGGCAACTTCGGCACGGGTGGAACGATCGGCACGGGCGGAAGCATCCCAACCGGTACC] [+] EMBL BX628280 [ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGACAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCGGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCAGCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCAGCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGCTTCCGTTTGGGCGCCGGAG TGTATGGAG ] [+] EMBL BX620876 [ ACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGACAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCGGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCAGCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCAGCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGCTTCCGTTTGGGCGCCGGAGNTGTATGGAGGTGCCCGACCCGGTACCGGTATTGGTGGCAACTTCGGCACGGGTGGAACGATCGGCACGGGCGGAAGCATCCCAACCGGTACC] consensusID : consensus_4334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CAGAATTCCGCACGAGTGTAACTCGGACGGTTCGATCACGCTCGCCACATACGGACGGCTCGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGCAGCGACGACGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACGGCAGCTCCGACGACGATACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGGTGGCTTCCGTATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGTAGGNAACTTCGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACCGGGTATCCTCACCCGGGTGTAANTCAAGTCTAGCCNN] [+] EMBL BX468969 [CAGAATTCCGCACGAGTGTAACTCGGACGGTTCGATCACGCTCGCCACATACGGACGGCTCGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGCAGCGACGACGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACGGCAGCTCCGACGACGATACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGGTGGCTTCCGTATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGTAGGNAACTTCGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACCGGGTATCCTCACCCGGGTGTAANTCAAGTCTAGCCNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4334#0 ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGA 60 consensus_4334#1 ------------------------------------------------------------ consensus_4334#0 CAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACAT-C 119 consensus_4334#1 -------CAGAATTCCGCACGA-GTGTAACTCGGACGGTTCGATCACGCTCGCCACATAC 52 * ** * * * * ******************************* * consensus_4334#0 GGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGAC 179 consensus_4334#1 GGACGGCTCGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGAC 112 ****************** ***************************************** consensus_4334#0 CGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGC 239 consensus_4334#1 CGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGC 172 ************************************************************ consensus_4334#0 AACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGC 299 consensus_4334#1 AACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGC 232 ***************************************************** ****** consensus_4334#0 AGCGACGACGGC-TGCTACCACCGCTCCTACGACGGCTGCCACCACGAC-GACCACAACG 357 consensus_4334#1 AGCGACGACGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACG 292 ************ *********** *********************** ********** consensus_4334#0 GCAGCTCCGACGACGATGACGACGACGAC-TACTGCCGCACCGGTTACTGGGTCGTGCGG 416 consensus_4334#1 GCAGCTCCGACGACGAT-ACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGG 351 ***************** *********** ************** *************** consensus_4334#0 TCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGG 476 consensus_4334#1 TCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGG 411 ****************************************************** ***** consensus_4334#0 TGGCTTCCGTTT--GGGCGCCGGAGTGTATGGAGGTGCCCGACCCGGTACCGGTATTGGT 534 consensus_4334#1 TGGCTTCCGTATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGT 471 ********** * **************************** ***************** consensus_4334#0 -GGCAACTTCGGCACGGGTGGAACGATCGGCAC-GGGCGGA-AGCATCCCAACCGGTACC 591 consensus_4334#1 AGGNAACTTCGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACC 531 ** ************************** ** ******* ****************** consensus_4334#0 ------------------------------------- consensus_4334#1 GGGTATCCTCACCCGGGTGTAANTCAAGTCTAGCCNN 568 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||