These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1141 fasta sequence [CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAAGTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGTAGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAACCGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATCCGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGCGTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGTCACAAGTATTGTTCTAGCGATCATTCAACCCCAAATAATCCCAAAAATATAGCCTCCAAAACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAAACATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAAATGTAAATCCTCTGCACTTGCGAGGATCGAAAA-CGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACACAAAAGGCGAAAAGTTAATTTGCCCATTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCAGACTAAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCGAAGAAGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAACATTAGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAACCTATGTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAAATTGGAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGCCAATGTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGGGAAAA] [+] EMBL BM576038 [CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAAGTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGTAGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAACCGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATCCGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGCGTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGTCACAAGTATTGTTCTAGCGATCATTCAACCCCAAATAATCCCAAAAATATAGCCTCCAAAACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAAACATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAAATGTAAATCCTCTGCACTTGCGAGGATCGAAAA CGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACA ] [+] EMBL BX620561 [ ACTGGAATGCAAGTAAAACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATGTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAATGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAAAAGATGAAATCATCAACACAAAAGGCGAAAAGTTAATTTGCCCATTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCAGACTAAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCGAAGAAGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAACATTAGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAACCTATGTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAAATTGGAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGCCAATGTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGGGAAAA] consensusID : consensus_4337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [ATCCCGAGGTTAGAGTCGTCGGCACTTCATTCCATACCTANCGTCTGTGTCACAAGTATGTTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAAAACACAACTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAAACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATTTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTGCCCATTTTAGAATATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCAGACTAAATACCTAAAGCTAATCATACACATTGTCAAACACATTTGTTTACCAACTGTCGAAGAAGG] [+] EMBL AL930995 [ATCCCGAGGTTAGAGTCGTCGGCACTTCATTCCATACCTANCGTCTGTGTCACAAGTATGTTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAAAACACAACTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAAACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATTTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTGCCCATTTTAGAATATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCAGACTAAATACCTAAAGCTAATCATACACATTGTCAAACACATTTGTTTACCAACTGTCGAAGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4337#0 CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAA 60 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 GTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGT 120 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 AGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAAC 180 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 CGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATC 240 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 CGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGC 300 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 GTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGT 360 consensus_4337#1 ---------ATCCCGAGGTTAGAGTCGTCGGC-ACTTCATTCCATACCTANCGTCTGTGT 50 ** ** ************ ***************** *** ** ** consensus_4337#0 CACAAGTATTGTTCTAGCGATCATTCAACCCC-AAATAATCCCAAAAATATAGCCTCCAA 419 consensus_4337#1 CACAAGTAT-GTTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAA 109 ********* ********************** *************************** consensus_4337#0 AACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAA 479 consensus_4337#1 AAC-ACAAC-TTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAA 167 *** ***** ********************************************** *** consensus_4337#0 ACATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACT 539 consensus_4337#1 ACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACT 227 ************ *********************************************** consensus_4337#0 CCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAA 599 consensus_4337#1 CCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAA 287 ****************************************** ***************** consensus_4337#0 ATGTAAATCCTCTGCACTTGCGAGGATCGAAAAC-GAGTGCAGATTCAAAACACACATAC 658 consensus_4337#1 ATTTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATAC 347 ** ******************************* ************************* consensus_4337#0 AAAGTTATCCAAAGACAGAAGACGAAAGCATCCACACAAAAGGCGAAAA--GTTAATTTG 716 consensus_4337#1 AAAGTTATCCAAAGACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTG 407 ************************************ ********* ** ********* consensus_4337#0 CCCATTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCA 776 consensus_4337#1 CCCATTTTAGAATATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCA 467 ************ ********************************* ************* consensus_4337#0 GACTAAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCG 836 consensus_4337#1 GACTAAATACCTAAAGCTAATCATACACATTGTCAAACACATTTGTTTACCAAC-TGTCG 526 ********* *************** * *** **** ******** ******* ***** consensus_4337#0 AAGAAGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAA 896 consensus_4337#1 AAGAAGG----------------------------------------------------- 533 ******* consensus_4337#0 CATTAGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAAC 956 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 CTATGTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAA 1016 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 ATTGGAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGC 1076 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 CAATGTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGG 1136 consensus_4337#1 ------------------------------------------------------------ consensus_4337#0 GAAAA 1141 consensus_4337#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||