These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1142 fasta sequence [CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATAACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGCAGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACGTTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGGACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGCGGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAGACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAACAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGCAAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGCACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATCCAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCTGCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGATA] [+] EMBL BM589237 [CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATAACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGCAGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACGTTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGGACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGCGGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAGACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAACAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGCAAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGCACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATCCAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCTGCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAA ] [+] EMBL BM628511 [ CCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGCAAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGCACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATCCAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCTGCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGATA] consensusID : consensus_4350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAGGGGCAAGAAAAATAAGCGCCGCGATAAGGATAAACCTCTGTTTAAGTTGGGCGACGAACCCGGAAGCAAGGGTATGGCGGATGATTCCATATACGGTGACATCGGAGACTACCATCCGAGCCGTCGTTATGAGGATGTGGCAGGATCGTCAAAACTAGAAGGAAACACGGGTCGCCACAGCTACTTCGATAAGTATAATGACAATACAGCGGCTGAACGCGAATCCTCTAGCATACCGC] [+] EMBL BM640837 [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAGGGGCAAGAAAAATAAGCGCCGCGATAAGGATAAACCTCTGTTTAAGTTGGGCGACGAACCCGGAAGCAAGGGTATGGCGGATGATTCCATATACGGTGACATCGGAGACTACCATCCGAGCCGTCGTTATGAGGATGTGGCAGGATCGTCAAAACTAGAAGGAAACACGGGTCGCCACAGCTACTTCGATAAGTATAATGACAATACAGCGGCTGAACGCGAATCCTCTAGCATACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4350#0 CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATA 60 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 ACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGC 120 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 AGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACG 180 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 TTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGG 240 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 ACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGC 300 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 GGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAG 360 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 ACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAA 420 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 CAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGC 480 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 AAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGC 540 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 ACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATC 600 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 CAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCT 660 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 GCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGA 720 consensus_4350#1 --------------------------CCGCCCACGCGTCCGCCCACGCGTCCG----GGA 30 ** * * * * ** * * * *** consensus_4350#0 AAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACT 780 consensus_4350#1 AAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACT 90 ************************************************************ consensus_4350#0 ACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGA 840 consensus_4350#1 ACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGA 150 ************************************************************ consensus_4350#0 GTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAA 900 consensus_4350#1 GTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAA 210 ************************************************************ consensus_4350#0 GATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGA 960 consensus_4350#1 GATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGA 270 ************************************************************ consensus_4350#0 TGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATT 1020 consensus_4350#1 TGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATT 330 ************************************************************ consensus_4350#0 GGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCA 1080 consensus_4350#1 GGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCA 390 ************************************************************ consensus_4350#0 AATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGA 1140 consensus_4350#1 AATACTGTCCTACATGCGGCAGGGGGGAAGGGGCAAGAAAAATAAGCGCCGCGATAAGGA 450 ***************************** ****************************** consensus_4350#0 TA---------------------------------------------------------- 1142 consensus_4350#1 TAAACCTCTGTTTAAGTTGGGCGACGAACCCGGAAGCAAGGGTATGGCGGATGATTCCAT 510 ** consensus_4350#0 ------------------------------------------------------------ consensus_4350#1 ATACGGTGACATCGGAGACTACCATCCGAGCCGTCGTTATGAGGATGTGGCAGGATCGTC 570 consensus_4350#0 ------------------------------------------------------------ consensus_4350#1 AAAACTAGAAGGAAACACGGGTCGCCACAGCTACTTCGATAAGTATAATGACAATACAGC 630 consensus_4350#0 ----------------------------- consensus_4350#1 GGCTGAACGCGAATCCTCTAGCATACCGC 659 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||