cluster # 4366

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Anopheles gambiae
cluster # 4366 cluster # 4366 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4366#0 length = 754 sequences # 2

consensus_4366#1 length = 331 sequences # 1

consensusID : consensus_4366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 754
fasta sequence

                              [CCGCGTCGTGCGAGCAGTTGTGTGAAAATCGTGTTCGAAATCTTCCCGTGTGCGGAAACACGTACACGTGGACAGCGACACTGTATGATCATAGTTCGCCGACGCGCCCAGTGTCTGTGTGTCGGACCGTAGATCATTATTAATATATTGTAATAAATTAAATAATTCAAACTAGAGAAAGAGATACGGGGGATAGGGAGTAGGCGAAAGCAGGAGAGTGAAACGGAGGATAATGGTTGATTCTGTGAGCGCTGACACGCGTGCTTCGCGAGGAAAGCAATGGTACTACACAAAAACGGCCCCTCTTGGTGGCCGTCTAAATGACGCACCGTAACACTCTAACAATCAGCTTGAGATCCCATCAAAGTGTGTGCGTTCGTGTTATCCAGTTGATTAGGCGACCATCATCACACGCGTCCTTTTCTTGGTTCGCGGGTTGTACAAAAAAACTCCAAGCGAGAGAGACCACCATTAGAGAGGAGAGATCACCAATAACGCTAGCGCGAAACACAGACACACACTGTACGATATGTGATTGAATTCGATTTCCTAATTTTTGCGTACTCTATTTATTAAACAAGAAAGCAAGGAACAACGGCGACAAACTTTACTGCAATGAATAATGTTGTGAATCGATGAGATAAAACCAAATAACACAATAGCACTGGGGAAAGGCACTTGGAAGAATGCGGANGGAAGAATGCGAACAACGGGCCTAATATTCGCTACATNCTACAAACACACACACACATGC]

[+] EMBL BM644644             [CCGCGTCGTGCGAGCAGTTGTGTGAAAATCGTGTTCGAAATCTTCCCGTGTGCGGAAACACGTACACGTGGACAGCGACACTGTATGATCATAGTTCGCCGACGCGCCCAGTGTCTGTGTGTCGGACCGTAGATCATTATTAATATATTGTAATAAATTAAATAATTCAAACTAGAGAAAGAGATACGGGGGATAGGGAGTAGGCGAAAGCAGGAGAGTGAAACGGAGGATAATGGTTGATTCTGTGAGCGCTGACACGCGTGCTTCGCGAGGAAAGCAATGGTACTACACAAAAACGGCCCCTCTTGGTGGCCGTCTAAATGACGCACCGTAACACTCTAACAATCAGCTTGAGATCCCATCAAAGTGTGTGCGTTCGTGTTATCCAGTTGATTAGGCGACCATCATCACACGCGTCCTTTTCTTGGTTCGCGGGTTGTACAAAAAAACTCCAAGCGAGAGAGACCACCATTAGAGAGGAGAGATCACCAATAACGCTAGCGCGAAACACAGACACACACTGTACGATATGTGATTGAATTCGATTTCCTAATTTTTGCGTACTCTATTTATTAAACAAGAAAGCAAGGAACAACGGCGACAAACTTTACTGCAATGAATAATGTTGTGAATCGATGAGATAAAACCAAATAACACAATAGCACTGGGGAAAGGCACTTGGAAGAATGC                                                                ]
[+] EMBL BX623814             [                                                                              CACTGTATGATCATAGTTCGCCGACGCGCCCAGTGTCTGTGTGTCGGACCGTAGATCATTATTAATATATTGTAATAAATTAAATAATTCAAACTAGAGAAAGAGATACGGGGGATAGGGAGTAGGCGAAAGCAGGAGAGTGAAACGGAGGATAATGGTTGATTCTGTGAGCGCTGACACGCGTGCTTCGCGAGGAAAGCAATGGTACTACACAAAAACGGCCCCTCTTGGTGGCCGTCTAAATGACGCACCGTAACACTCTAACAATCAGCTTGAGATCCCATCAAAGTGTGTGCGTTCGTGTTATCCAGTTGATTAGGCGACCATCATCACACGCGTCCTTTTCTTGGTTCGCGGGTTGTACAAAAAAACTCCAAGCGAGAGAGACCACCATTAGAGAGGAGAGATCACCAATAACGCTAGCGCGAAACACAGACACACACTGTACGATATGTGATTGAATTCGATTTCCTAATTTTTGCGTACTCTATTTATTAAACAAGAAAGCAAGGAACAACGGCGACAAACTTTACTGCAATGAATAATGTTGTGAATCGATGAGATAAAACCAAATAACACAATAGCACTGGGGAAAGGCACTTGGAAGAATGCGGANGGAAGAATGCGAACAACGGGCCTAATATTCGCTACATNCTACAAACACACACACACATGC]




>consensus_4366#0
CCGCGTCGTGCGAGCAGTTGTGTGAAAATCGTGTTCGAAATCTTCCCGTGTGCGGAAACA
CGTACACGTGGACAGCGACACTGTATGATCATAGTTCGCCGACGCGCCCAGTGTCTGTGT
GTCGGACCGTAGATCATTATTAATATATTGTAATAAATTAAATAATTCAAACTAGAGAAA
GAGATACGGGGGATAGGGAGTAGGCGAAAGCAGGAGAGTGAAACGGAGGATAATGGTTGA
TTCTGTGAGCGCTGACACGCGTGCTTCGCGAGGAAAGCAATGGTACTACACAAAAACGGC
CCCTCTTGGTGGCCGTCTAAATGACGCACCGTAACACTCTAACAATCAGCTTGAGATCCC
ATCAAAGTGTGTGCGTTCGTGTTATCCAGTTGATTAGGCGACCATCATCACACGCGTCCT
TTTCTTGGTTCGCGGGTTGTACAAAAAAACTCCAAGCGAGAGAGACCACCATTAGAGAGG
AGAGATCACCAATAACGCTAGCGCGAAACACAGACACACACTGTACGATATGTGATTGAA
TTCGATTTCCTAATTTTTGCGTACTCTATTTATTAAACAAGAAAGCAAGGAACAACGGCG
ACAAACTTTACTGCAATGAATAATGTTGTGAATCGATGAGATAAAACCAAATAACACAAT
AGCACTGGGGAAAGGCACTTGGAAGAATGCGGANGGAAGAATGCGAACAACGGGCCTAAT
ATTCGCTACATNCTACAAACACACACACACATGC

consensusID : consensus_4366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [CCGCCCACGCGTCCGATGCGAACAACGGGCCTAATATTCGCTACATCCTACAAACACACACACACATGCTCACCAATTTGCATTCGTCACAGGCGTTACAATAGCAGAATGGATCCGATTTACCATACCATTTTTGGTCGAACTATGGCTATCCACACACGTATACGGCATGCTGGCGACTGACAGAGTTAAATGTTTTTTTTTACAACCGAAGGCTTTACATTACAAACCATACCAAACCAGCACGCATCAACGTGTGTGCGTCAACAATAGCAAATTTAATAGTAAGACATTTTTTACTTTTAGAACTTGTTTTTAGAATGGCTCTTAC]

[+] EMBL BM640842             [CCGCCCACGCGTCCGATGCGAACAACGGGCCTAATATTCGCTACATCCTACAAACACACACACACATGCTCACCAATTTGCATTCGTCACAGGCGTTACAATAGCAGAATGGATCCGATTTACCATACCATTTTTGGTCGAACTATGGCTATCCACACACGTATACGGCATGCTGGCGACTGACAGAGTTAAATGTTTTTTTTTACAACCGAAGGCTTTACATTACAAACCATACCAAACCAGCACGCATCAACGTGTGTGCGTCAACAATAGCAAATTTAATAGTAAGACATTTTTTACTTTTAGAACTTGTTTTTAGAATGGCTCTTAC]




>consensus_4366#1
CCGCCCACGCGTCCGATGCGAACAACGGGCCTAATATTCGCTACATCCTACAAACACACA
CACACATGCTCACCAATTTGCATTCGTCACAGGCGTTACAATAGCAGAATGGATCCGATT
TACCATACCATTTTTGGTCGAACTATGGCTATCCACACACGTATACGGCATGCTGGCGAC
TGACAGAGTTAAATGTTTTTTTTTACAACCGAAGGCTTTACATTACAAACCATACCAAAC
CAGCACGCATCAACGTGTGTGCGTCAACAATAGCAAATTTAATAGTAAGACATTTTTTAC
TTTTAGAACTTGTTTTTAGAATGGCTCTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4366#0      CCGCGTCGTGCGAGCAGTTGTGTGAAAATCGTGTTCGAAATCTTCCCGTGTGCGGAAACA 60
consensus_4366#1      ------------------------------------------------------------
                                                                                  

consensus_4366#0      CGTACACGTGGACAGCGACACTGTATGATCATAGTTCGCCGACGCGCCCAGTGTCTGTGT 120
consensus_4366#1      -----------------------------------CCGCCCACGCGTCCGATGC--GAAC 23
                                                          **** ***** **  **   *   

consensus_4366#0      GTCGGACCGTAGATCATTATTAATATATTGTAATAAATTAAATA-ATTCAAACTAGA--G 177
consensus_4366#1      AACGGGCCT---AATATTCGCTACATCCTACAAACACACACACACATGCTCACCAATTTG 80
                        *** **    *  ***    * **  *  **  *   * * * ** *  ** *    *

consensus_4366#0      AAAGAGATACGGGGGATAGGGAGTAGGCGAAAGCAGGAGAGTGAAACGGAGGATAATGGT 237
consensus_4366#1      CATTCGTCACAGGCGTTAC--AATAGCAGAATGGATCCGATTTACCATACCATTTTTGGT 138
                       *   *  ** ** * **   * ***  *** * *   ** * *         *  ****

consensus_4366#0      TGATTCTGTGAGCGCTGACACGCGTGCTTCGCGAGGAAAGCAATGGTACTACACAAAAAC 297
consensus_4366#1      CGAA-CTATGGCTATCCACACACGTA-TACGGCATGCTGGCGACTG-ACAGAGTTAAAT- 194
                       **  ** **       **** ***  * **  * *   ** *  * **      ***  

consensus_4366#0      GGCCCCTCTTGGTGGCCGTCTAAATGACGCACCGTAACACTCTAACAATCAGCTTGAGAT 357
consensus_4366#1      -GTTTTTTTTTACAACCGAAGGCTTTACATTACAAACCATACCAA--ACCAGCACG---- 247
                       *    * **     ***      * **    *  * **  * **  * ****  *    

consensus_4366#0      CCCATCAAAGTGTGTGCGTTCGTGTTATCCAGTTGATTAG-GCGACCATCATCACACGCG 416
consensus_4366#1      --CATCAACGTGTGTGCGTCAACAATAGCAAATTTAATAGTAAGACATTTTTTACTTTTA 305
                        ****** **********      ** * * ** * ***   ***  *  * **     

consensus_4366#0      TCCTTTTCTTGGTTCGCGGGTTGTACAAAAAAACTCCAAGCGAGAGAGACCACCATTAGA 476
consensus_4366#1      GAACTTGTTTTTAGAATGGCTCTTAC---------------------------------- 331
                          **  **       ** *  ***                                  

consensus_4366#0      GAGGAGAGATCACCAATAACGCTAGCGCGAAACACAGACACACACTGTACGATATGTGAT 536
consensus_4366#1      ------------------------------------------------------------
                                                                                  

consensus_4366#0      TGAATTCGATTTCCTAATTTTTGCGTACTCTATTTATTAAACAAGAAAGCAAGGAACAAC 596
consensus_4366#1      ------------------------------------------------------------
                                                                                  

consensus_4366#0      GGCGACAAACTTTACTGCAATGAATAATGTTGTGAATCGATGAGATAAAACCAAATAACA 656
consensus_4366#1      ------------------------------------------------------------
                                                                                  

consensus_4366#0      CAATAGCACTGGGGAAAGGCACTTGGAAGAATGCGGANGGAAGAATGCGAACAACGGGCC 716
consensus_4366#1      ------------------------------------------------------------
                                                                                  

consensus_4366#0      TAATATTCGCTACATNCTACAAACACACACACACATGC 754
consensus_4366#1      --------------------------------------