These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [TGCTTAAGGTGTGTGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGTATGGATGATTTAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCTTTTTTTGTAAATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTTTATTTGAAAAAACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCACACAGCCGTAAAGGCGTGCGTGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCATCATTGCTGGTAAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAAGCAAACAGGTGATAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTGTGTGTGTGCTGTAAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGTCTGCGCGTCACGCGAAAGGGAATGGATGAGCGGAGTTTCAGTTAACAATTAAAGGGCCACAATGTACTGCTTCGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACATTAGAAGTGGGTCTTTGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCATCACCATTGAAAACATTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGTTACTACACCGATTGTGCCACACACGTAGC] [+] EMBL BX626989 [TGCTTAAGGTGTGTGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGTATGGATGATTTAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCTTTTTTTGTAAATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTTTATTTGAAAAAACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCACACAGCCGTAAAGGCGTGCGTGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCATCATTGCTGGTAAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAAGCAAACAGGTGATAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTGTGTGTGTGCTGTAAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGTCTGCGCGTCACGCGAAAGGGAATGGATGAGCGGAGTTTCAGTTAACAATTAAAGGGCCACAATGTACTGCTTCGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACATTAGAAGTGGGTCTTTGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCATCACCATTGAAAACATTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGTTACTACACCGATTGTGCCACACACGTAGC] consensusID : consensus_4377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTCTGCAATAATTAAATTGAGGTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTGTTTTACTTTTACCTTGTGAAGTATGTTCAAATAGTGAGTAGAGCTGAGAGGTGAGAATACCATATATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGTGTGTTGTTTGTAGGGTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAGTGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTGTCATCCAGCAACAGCAAAATGCAACAACAGGCAACAACAAAGAAAAACAAATGGCAAAAGTAAACGATGGTACACAAAATCATACATAT] [+] EMBL BX612579 [GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTCTGCAATAATTAAATTGAGGTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTGTTTTACTTTTACCTTGTGAAGTATGTTCAAATAGTGAGTAGAGCTGAGAGGTGAGAATACCATATATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGTGTGTTGTTTGTAGGGTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAGTGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTGTCATCCAGCAACAGCAAAATGCAACAACAGGCAACAACAAAGAAAAACAAATGGCAAAAGTAAACGATGGTACACAAAATCATACATAT] [+] EMBL BX610114 [ TCAGCACAGGCGTGTGTTGTTTGTAGGGTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAGTGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTGTCATCCAGCAACAGCAAAATGCAACAACAGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4377#0 ---------TGCTTAAGGTGTG-TGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGT 50 consensus_4377#1 GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTC 60 * * **** * *** * * * ****** * * * consensus_4377#0 ATGGATGATTTAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCT 110 consensus_4377#1 TGCAATAATT--AAATTGAG---GTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTG 115 ** *** ** ** ** * * * *** * ** * * * **** ** consensus_4377#0 TTTTTTGTAAATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTT 170 consensus_4377#1 TTTTACTTTTACCT-TGTGAAGTATGTTCAAATAGTGA--------GTAGAGCTGAGAGG 166 **** * * * ** * ** * * * * ** * ***** * consensus_4377#0 TATTTGAAAAAACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCA-CACAGCCGT 229 consensus_4377#1 TGAGAATACCATATATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGT 226 * * * * * * ** ** * * * * * * ** ***** *** consensus_4377#0 AAAGGCGTGCGTGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCA 289 consensus_4377#1 GT-GTTGTTTGTAGGGTTTTTTTGTGTGTAAGA-AAATGCAAAAAAATAGATTTTTTACA 284 * ** ** * * * * *** * *** * * *** * * ** ** consensus_4377#0 TC-ATTGCTGGTAAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAA 348 consensus_4377#1 CCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTA 344 * * **** ** * * * * * * * * ** ** **** * consensus_4377#0 GCAAACAGGTGATAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTG 408 consensus_4377#1 -CAGCCA---CACAATAGAGTGTAACCACATACG-----AGATTGATGATTAT---TGTA 392 ** ** * *** * * * ** * * * * ** * *** consensus_4377#0 TGTGTGTGCTGTAAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGT 468 consensus_4377#1 CAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGA-CGC 451 * * * * *** * ** ** * * * * *** ** consensus_4377#0 CTGCGCGTCACGCGAAAGGGAATGGATGAGCGGA---GTTTCAGTTAACAATTAAAGGGC 525 consensus_4377#1 TGGAGAGCAGTTTGTTAG--ATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCAT 509 * * * * ** * * * * ** ** *** *** *** * consensus_4377#0 CACAATGTACTGCTTCGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACA 585 consensus_4377#1 AAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAA 569 * *** * * * ** ** * * * * * * consensus_4377#0 TTAGAAGTGGGTCTTTGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCA 645 consensus_4377#1 GAAGCAACAA-CCACCAAGTGATAGGAAATTGTCATCCAGCAA--CAGCAAAATGCAACA 626 ** * * ** * * ** * * ** * ******* ** ** consensus_4377#0 TCACCATTGAAAACATTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGT 705 consensus_4377#1 ACA-----GGCAACA----ACAAAGAAAAACAAATGGCAAAAGTAAACGATGGTACACAA 677 ** * **** ** *** * * *** * * * consensus_4377#0 TACTACACCGATTGTGCCACACACGTAGC 734 consensus_4377#1 AATCATACATAT----------------- 689 * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||