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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1078 fasta sequence
[TTGAAGATTCAGACAAAGAATGCGAATGGTTTATTAGTGAAACAGTCGAGAGGGAAAAAAGTTTATTAATTGAAAATGTTTTATAAATTGAATTGAAATAGCCGTGGGGTCGAATGGGTTGTTATTGGATGGTTCGAGGCCAAAACGTCGAATCTTGGGAATTGGAATGCAAGCAATAATTTGAATTTCGTATTACTTACATTTTCTTTGAAAATTAAAAAAAAAGGATCTTTGACGTCAAAAGTGTCTGATGTGGGCAGTTTAAAAACCAAACCCTTTACCCTCCTTTGTGATTCTAACTGCCACCCATTCTGAGTATTCAACAGGCTGCAATTAAACGGCACAATACCGGTCGCTCGCTACATTATTCAATCCGCCGTTACAATGCAATCAATCGATACGTCGTGCTCGTCGGACGGCAAC-TCGTCGGCCGCCACAATTTGCTCGCTAAATCCCACCCCCACCAGGTGGGTGGTGTGTCTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCGTGACCGAGA-CGCCCACCTGCACGGGTAAACGCTACACCGGGCAGAATGATTAGATCGAATCCT-GT-TGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCGGCAGCCGCTCGTAATCCTCCATATCATTGATTCGTACCATTTTCATCGCGGTTTTTTTTTTACGTCGGCACAAAAACCTGTTTGCGTTGCTGAAACATGCGCTCCAGCAGGGGTCGGGTGTTGACTTCGGTGTCGGTGCTGAGATAGAAGCTAAAACTTTAACACTGCTCGTAGAACGGAAGTGCCGTAACCTTGTCGATGATGATGCTCGATTGTCGCTGACGTTCGGCGGGCGTTAGCGCGTGCAGCAGCTGCTTGATACGCTGGCGGAGGGCCACTTTAGCGGGATTCGGAATGCGTTGACATGGTGTTTTGTTTTTGTTGGGAGGGTTTGGGTGCGAAATTAGATTTGAAACATTCAAATTTGGGATCGAAGATGAAGGTGATGTTAAAAGCAAAGGTTT]
[+] EMBL CNS08FDZ [TTGAAGATTCAGACAAAGAATGCGAATGGTTTATTAGTGAAACAGTCGAGAGGGAAAAAAGTTTATTAATTGAAAATGTTTTATAAATTGAATTGAAATAGCCGTGGGGTCGAATGGGTTGTTATTGGATGGTTCGAGGCCAAAACGTCGAATCTTGGGAATTGGAATGCAAGCAATAATTTGAATTTCGTATTACTTACATTTTCTTTGAAAATTAAAAAAAAAGGATCTTTGACGTCAAAAGTGTCTGATGTGGGCAGTTTAAAAACCAAACCCTTTACCCTCCTTTGTGATTCTAACTGCCACCCATTCTGAGTATTCAACAGGCTGCAATTAAACGGCACAATACCGGTCGCTCGCTACATTATTCAATCCGCCGTTACAATGCAATCAATCGATACGTCGTGCTCGTCGGACGGCAAC TCGTCGGCCGCCACAATTTGCTCGCTAAATCCCACCCCCACCAGGTGGGTGGTGTGTCTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCGTGACCGAGA CGCCCACCTGCACGGGTAAACGCTACACCGGGCAGAATGATTAGATCGAATCCT GT TGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCGGCAGCCGCTCGTAATCCTCCATATCATTGATTCGTACCATTTTCATCGCGGTTTTTTTTTTACGTCGGCACAAAAACCTGTTTGCGTTGCTGAAACATGCGCTCCAGCAGGGGTCGGGTGTTGACTTCGGTGTCGGTGCTGAGATAGAAGCTAAAACTTTAA ]
[-] EMBL CNS08FDY [ TCAATCGATACGTCGTGCTCGTCGGACGGCAACTTCGTCGGCCGCCACAATTTGCTCGCTAAATCCCACCCCCACCAGGTGGGTGGTGTG CTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCGTGACCGAGACCGCCCACCTGCACGGGTAAACGCTACACCGGGCAGAATGATTAGATCGAATCCTAGTATGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCGGCAGCCGCTCGTAATCCTCCATATCATTGATTCGTACCATTTTCATCGCGG TCCTGTTGTACGTCGGCACAAAAACCTGTTTGCGTTGCTGAAACATGCGCTCCAGCAGGGGTCGGGTGTTGACTTCGGTGTCGGTGCTGAGATAGACGCTAATCCTTTGACACTGCTCGTAGAACGGAAGTGCCGTAACCTTGTCGATGATGATGCTCGATTGTCGCTGACGTTCGGCGGGCGTTAGCGCGTGCAGCAGCTGCTTGATACGCTGGCGGAGGGCCACTTTAGCGGGATTCGGAATGCGTTGACATGGTGTTTTGTTTTTGTTGGGAGGGTTTGGGTGCGAAATTAGATTTGAAACATTCAAATTTGGGATCGAAGATGAAGGTGATGTTAAAAGCAAAGGTTT]
consensusID : consensus_4393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[GTCGTGCTCGTCGGTACGGCAACTCGTCGGCCGCCACANATTTGCTCGCTNAAATCCGACCCCCACCAGNTGGCTCGGTGTGCTGCGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCCGTGACCCGAGACGCCCACCTGTCACGGGTAAACGCTACACCCGGGCAGAATGATTAGATCGAGTCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCAGGTACCCGCTCGTAATCCTCCATATCACTTGATTCGTACCATTGTTCATCGCGGTTCTGTTGTACGTCGGCAACAAAAACACTGTTTGCGTTGCTGAAACATGCGCTCCAGCCAGGGCCCCGGGTGTTGACCTTCGGTGTCGGTGCTGAGATAGACGCTAATCCTTGACACTGCTCGTAGACGCCTAATGCCNAGTCTGCCTC]
[-] EMBL BX469078 [GTCGTGCTCGTCGGTACGGCAACTCGTCGGCCGCCACANATTTGCTCGCTNAAATCCGACCCCCACCAGNTGGCTCGGTGTGCTGCGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCCGTGACCCGAGACGCCCACCTGTCACGGGTAAACGCTACACCCGGGCAGAATGATTAGATCGAGTCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCAGGTACCCGCTCGTAATCCTCCATATCACTTGATTCGTACCATTGTTCATCGCGGTTCTGTTGTACGTCGGCAACAAAAACACTGTTTGCGTTGCTGAAACATGCGCTCCAGCCAGGGCCCCGGGTGTTGACCTTCGGTGTCGGTGCTGAGATAGACGCTAATCCTTGACACTGCTCGTAGACGCCTAATGCCNAGTCTGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4393#0 TTGAAGATTCAGACAAAGAATGCGAATGGTTTATTAGTGAAACAGTCGAGAGGGAAAAAA 60
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 GTTTATTAATTGAAAATGTTTTATAAATTGAATTGAAATAGCCGTGGGGTCGAATGGGTT 120
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 GTTATTGGATGGTTCGAGGCCAAAACGTCGAATCTTGGGAATTGGAATGCAAGCAATAAT 180
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 TTGAATTTCGTATTACTTACATTTTCTTTGAAAATTAAAAAAAAAGGATCTTTGACGTCA 240
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 AAAGTGTCTGATGTGGGCAGTTTAAAAACCAAACCCTTTACCCTCCTTTGTGATTCTAAC 300
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 TGCCACCCATTCTGAGTATTCAACAGGCTGCAATTAAACGGCACAATACCGGTCGCTCGC 360
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 TACATTATTCAATCCGCCGTTACAATGCAATCAATCGATACGTCGTGCTCGTCGG-ACGG 419
consensus_4393#1 -----------------------------------------GTCGTGCTCGTCGGTACGG 19
************** ****
consensus_4393#0 CAACTCGTCGGCCGCCACAA-TTTGCTCGCTAAA-TCCCACCCCCACCAGGTGGGT-GGT 476
consensus_4393#1 CAACTCGTCGGCCGCCACANATTTGCTCGCTNAAATCCGACCCCCACCAGNTGGCTCGGT 79
******************* ********** ** *** *********** *** * ***
consensus_4393#0 GTGTCTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATC 536
consensus_4393#1 GTG-CTGCGG-CCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATC 137
*** ****** *************************************************
consensus_4393#0 CACCACC-GTGACC-GAGACGCCCACCTG-CACGGGTAAACGCTACACC-GGGCAGAATG 592
consensus_4393#1 CACCACCCGTGACCCGAGACGCCCACCTGTCACGGGTAAACGCTACACCCGGGCAGAATG 197
******* ****** ************** ******************* **********
consensus_4393#0 ATTAGATCGAATCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGC 652
consensus_4393#1 ATTAGATCGAGTCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGC 257
********** *************************************************
consensus_4393#0 TTGATATTCCACGTGGTCGTC-GGCAGCCGCTCGTAATCCTCCATATCA-TTGATTCGTA 710
consensus_4393#1 TTGATATTCCACGTGGTCGTCAGGTACCCGCTCGTAATCCTCCATATCACTTGATTCGTA 317
********************* ** * ********************** **********
consensus_4393#0 CCATT-TTCATCGCGGTTTTTTTTTTACGTCGGCA-CAAAAAC-CTGTTTGCGTTGCTGA 767
consensus_4393#1 CCATTGTTCATCGCGGTTCTGTTGT-ACGTCGGCAACAAAAACACTGTTTGCGTTGCTGA 376
***** ************ * ** * ********* ******* ****************
consensus_4393#0 AACATGCGCTCCAGCAGGGGTC--GGGTGTTGAC-TTCGGTGTCGGTGCTGAGATAGAAG 824
consensus_4393#1 AACATGCGCTCCAGCCAGGGCCCCGGGTGTTGACCTTCGGTGTCGGTGCTGAGATAGACG 436
*************** *** * ********** *********************** *
consensus_4393#0 CTAAAACTTTAACACTGCTCGTAGAACGGAAGTGCCGTAACCTTGTCGATGATGATGCTC 884
consensus_4393#1 CTAAT-CCTTGACACTGCTCGTAGACGCCTAATGCCNAGTCTGCCTC------------- 482
**** * ** ************** * **** * **
consensus_4393#0 GATTGTCGCTGACGTTCGGCGGGCGTTAGCGCGTGCAGCAGCTGCTTGATACGCTGGCGG 944
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 AGGGCCACTTTAGCGGGATTCGGAATGCGTTGACATGGTGTTTTGTTTTTGTTGGGAGGG 1004
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 TTTGGGTGCGAAATTAGATTTGAAACATTCAAATTTGGGATCGAAGATGAAGGTGATGTT 1064
consensus_4393#1 ------------------------------------------------------------
consensus_4393#0 AAAAGCAAAGGTTT 1078
consensus_4393#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||