cluster # 440

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Anopheles gambiae
cluster # 440 cluster # 440 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_440#0 length = 251 sequences # 1

consensus_440#1 length = 240 sequences # 1

consensusID : consensus_440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [CCGCCCACGCGTCCGGGCGCTGAAAACAGTACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTTCATCGAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCGCTTGTGGAGAAGAGGTAAATGTGAAGCCGTTCTTCGCTCTGTAACAACCCGAGTGCGCTGTACGGGTGAAGTGGGCAACCATTTTTTAACTGGGTGACAGA]

[+] EMBL BM579481             [CCGCCCACGCGTCCGGGCGCTGAAAACAGTACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTTCATCGAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCGCTTGTGGAGAAGAGGTAAATGTGAAGCCGTTCTTCGCTCTGTAACAACCCGAGTGCGCTGTACGGGTGAAGTGGGCAACCATTTTTTAACTGGGTGACAGA]




>consensus_440#0
CCGCCCACGCGTCCGGGCGCTGAAAACAGTACGCTCGCTTCAATCTCAACTCACCCAACC
AGAAGGTTTTGGTTCGTTGACGGACATCTTCATCGAAACGAAGGAACAGATGTGTGCAAA
CAGTGGAACAATAAAGTGTTAAATTGTGCGCTTGTGGAGAAGAGGTAAATGTGAAGCCGT
TCTTCGCTCTGTAACAACCCGAGTGCGCTGTACGGGTGAAGTGGGCAACCATTTTTTAAC
TGGGTGACAGA

consensusID : consensus_440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [CCGCCCACGCGTCCGGGAGGGTCGTGAAATGAATAAACATTCATTCGCTTTATTTAAATAGTTTTGTTTCATCGCGTATTCGCTTACAACCTTTGCTGCACTGCGGGCGCTGAAAACAGTACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTTCATCCAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCG]

[+] EMBL BM654089             [CCGCCCACGCGTCCGGGAGGGTCGTGAAATGAATAAACATTCATTCGCTTTATTTAAATAGTTTTGTTTCATCGCGTATTCGCTTACAACCTTTGCTGCACTGCGGGCGCTGAAAACAGTACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTTCATCCAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCG]




>consensus_440#1
CCGCCCACGCGTCCGGGAGGGTCGTGAAATGAATAAACATTCATTCGCTTTATTTAAATA
GTTTTGTTTCATCGCGTATTCGCTTACAACCTTTGCTGCACTGCGGGCGCTGAAAACAGT
ACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTT
CATCCAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_440#0      ------------------------------------------------------------
consensus_440#1      CCGCCCACGCGTCCGGGAGGGTCGTGAAATGAATAAACATTCATTCGCTTTATTTAAATA 60
                                                                                 

consensus_440#0      -----------------------------CCGCCCACGCGTC-CGGGCGCTGAAAACAGT 30
consensus_440#1      GTTTTGTTTCATCGCGTATTCGCTTACAACCTTTGCTGCACTGCGGGCGCTGAAAACAGT 120
                                                  **      **    *****************

consensus_440#0      ACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTT 90
consensus_440#1      ACGCTCGCTTCAATCTCAACTCACCCAACCAGAAGGTTTTGGTTCGTTGACGGACATCTT 180
                     ************************************************************

consensus_440#0      CATCGAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCG 150
consensus_440#1      CATCCAAACGAAGGAACAGATGTGTGCAAACAGTGGAACAATAAAGTGTTAAATTGTGCG 240
                     **** *******************************************************

consensus_440#0      CTTGTGGAGAAGAGGTAAATGTGAAGCCGTTCTTCGCTCTGTAACAACCCGAGTGCGCTG 210
consensus_440#1      ------------------------------------------------------------
                                                                                 

consensus_440#0      TACGGGTGAAGTGGGCAACCATTTTTTAACTGGGTGACAGA 251
consensus_440#1      -----------------------------------------