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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence
[ACCGTGTGGTTGACCGAAATCCCACACACACATACACGACATCGGACAATACGGTTCGTACAGGAAATTCTTGAGCCCGTTTGTTTTTTGAAACAACCATTCACTTTCTTACCGATAATGGTGTAGCATACGTACGATAGGAATATGAATTTTGTATAGCAAGTTACTCCTTTAATCCGTATCACCACTACTCTACAAATGTGATCGATCGGAGCTATTGCAATTTCTTCACGTGTTTAGTCAGAACGGACGCAGTTTTTTTCTCTATCTAATTGTGATAAGTGAAAGTAGTTTAGACTCGGTTGTTCAAACTGTGTTTCGCCCGTTTCGTGCGTAGTAATAATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGGCAAACTAGAGAATGGAAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTGTGGAGCAGTCAGAAGGCAGATGAGTATGTAGCAATTATGTGATATGTGAAAAGCGATGCATGCGAATGGGGGGAGGATAGAGATCGGAAAAGGCAATCGGAGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATAAAGCGAATGTTAGTTTTTTAGCATTGCAACATTGCATTCAATTTTATGTATAGAGATGAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCAGTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCACTCGATGGCGTACCGTATCGATAGCGAATTTCATTTCCCGTTACTGACTCGTTCAACTATTTTACATGCGATGCGCAATACTGGTGGACGGCGGGAAGGAGCAGCATCCTCAAATCCGATATCATCATATCTCGTAGAATAAGCATAAATATCGTTTGATTTCACTGATAGTATAAACAATTATTTCAATGTCTCT]
[+] EMBL BX608463 [ACCGTGTGGTTGACCGAAATCCCACACACACATACACGACATCGGACAATACGGTTCGTACAGGAAATTCTTGAGCCCGTTTGTTTTTTGAAACAACCATTCACTTTCTTACCGATAATGGTGTAGCATACGTACGATAGGAATATGAATTTTGTATAGCAAGTTACTCCTTTAATCCGTATCACCACTACTCTACAAATGTGATCGATCGGAGCTATTGCAATTTCTTCACGTGTTTAGTCAGAACGGACGCAGTTTTTTTCTCTATCTAATTGTGATAAGTGAAAGTAGTTTAGACTCGGTTGTTCAAACTGTGTTTCGCCCGTTTCGTGCGTAGTAATAATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGGCAAACTAGAGAATGGAAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTGTGGAGCAGTCAGAAGGCAGATGAGTATGTAGCAATTATGTGATATGTGAAAAGCGATGCATGCGAATGGGGGGAGGATAGAGATCGGAAAAGGCAATCGGAGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATAAAGCGAATGTTAGTTTTTTAGCATTGCAACATTGCATTCAATTTTATGTATAGAGATGAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCAGTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCACTCGATGGC ]
[+] EMBL BX628935 [ GATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTGTGGAGCAGTCAGAAGGCAGATGAGTATGTAGCAATTATGTGATATGTGAAAAGCGATGCATGCGAATGGGGGGAGGATAGAGATCGGAAAAGGCAATCGGAGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATAAAGCGAATGTTAGTTTTTTAGCATTGCAACATTGCATTCAATTTTATGTATAGAGATGAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCAGTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCACTCGATGGCGTACCGTATCGATAGCGAATTTCATTTCCCGTTACTGACTCGTTCAACTATTTTACATGCGATGCGCAATACTGGTGGACGGCGGGAAGGAGCAGCATCCTCAAATCCGATATCATCATATCTCGTAGAATAAGCATAAATATCGTTTGATTTCACTGATAGTATAAACAATTATTTCAATGTCTCT]
consensusID : consensus_4400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[GCAAGAATCGCCGAGGTTAATGTCAACTGTTTCGCCCGTTCGTGCGTAGTATATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGTGCAACTAAAGAATGGAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTTGTTGGAGCAGTCAGAAGTGCAGATGAGTATTGTAGCAATTATGTGATATTGTTGACAAGCGATGCATGCTGAATTGGGGGGAGGATAGAGATCGGAAAATGGCAATCGGACGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATTAAAAGCGAATTGTTCAGTTTCTTTTAAGCATTTTGGCGAACCATTTGGNATTACACATTTTAATTGTATTAAGAC]
[+] EMBL AL932059 [GCAAGAATCGCCGAGGTTAATGTCAACTGTTTCGCCCGTTCGTGCGTAGTATATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGTGCAACTAAAGAATGGAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTTGTTGGAGCAGTCAGAAGTGCAGATGAGTATTGTAGCAATTATGTGATATTGTTGACAAGCGATGCATGCTGAATTGGGGGGAGGATAGAGATCGGAAAATGGCAATCGGACGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATTAAAAGCGAATTGTTCAGTTTCTTTTAAGCATTTTGGCGAACCATTTGGNATTACACATTTTAATTGTATTAAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4400#0 ACCGTGTGGTTGACCGAAATCCCACACACACATACACGACATCGGACAATACGGTTCGTA 60
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 CAGGAAATTCTTGAGCCCGTTTGTTTTTTGAAACAACCATTCACTTTCTTACCGATAATG 120
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 GTGTAGCATACGTACGATAGGAATATGAATTTTGTATAGCAAGTTACTCCTTTAATCCGT 180
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 ATCACCACTACTCTACAAATGTGATCGATCGGAGCTATTGCAATTTCTTCACGTGTTTAG 240
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 TCAGAACGGACGCAGTTTTTTTCTCTATCTAATTGTGATAAGTGAAAGTAGTTTAGACTC 300
consensus_4400#1 -----------------------------------------GCAAGAATCGCCGAGGTTA 19
* * * * * ** *
consensus_4400#0 GGTTGTTCAAACTGTGTTTCGCCCGTTTCGTGCGTAGTAATAATGATCTTGATTCGATGA 360
consensus_4400#1 A--TGTC--AACTG--TTTCGCCCGTT-CGTGCGTAGTA--TATGATCTTGATTCGATGA 70
*** ***** *********** *********** ******************
consensus_4400#0 TATTAACACAAAACAGGTGACCGAACGAAGGCAAACTAGAGAATGGAAAAGGGATGGTTT 420
consensus_4400#1 TATTAACACAAAACAGGTGACCGAACGAAGTGCAACTAAAGAATGGAAA-GGGATGGTTT 129
****************************** ***** ********** **********
consensus_4400#0 GAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTG--TGGAGCAGTCAGAAG-GCAG 477
consensus_4400#1 GAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTTGTTGGAGCAGTCAGAAGTGCAG 189
************************************* *************** ****
consensus_4400#0 ATGAGTAT-GTAGCAATTATGTGATATG--TGAAAAGCGATGCATGCGAA--TGGGGGGA 532
consensus_4400#1 ATGAGTATTGTAGCAATTATGTGATATTGTTGACAAGCGATGCATGCTGAATTGGGGGGA 249
******** ****************** *** ************* * ********
consensus_4400#0 GGATAGAGATCGGAAAA-GGCAATCGGA-GTGAGAGAGATGGCAGAAATAGGAAACATTT 590
consensus_4400#1 GGATAGAGATCGGAAAATGGCAATCGGACGTGAGAGAGATGGCAGAAATAGGAAACATTT 309
***************** ********** *******************************
consensus_4400#0 TTCAT--AAAGCGAATG--TTAGTTTTTT---AGCATTGCAACATTGCATTCAATTTTAT 643
consensus_4400#1 TTCATTAAAAGCGAATTGTTCAGTTTCTTTTAAGCATTTTGGCGAACCATTTGGNATTAC 369
***** ********* * ***** ** ****** * **** ***
consensus_4400#0 GTATAGAGAT-GAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCA 702
consensus_4400#1 ACATTTTAATTGTATTAAGAC--------------------------------------- 390
** ** * * **
consensus_4400#0 GTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCAC 762
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 TCGATGGCGTACCGTATCGATAGCGAATTTCATTTCCCGTTACTGACTCGTTCAACTATT 822
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 TTACATGCGATGCGCAATACTGGTGGACGGCGGGAAGGAGCAGCATCCTCAAATCCGATA 882
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 TCATCATATCTCGTAGAATAAGCATAAATATCGTTTGATTTCACTGATAGTATAAACAAT 942
consensus_4400#1 ------------------------------------------------------------
consensus_4400#0 TATTTCAATGTCTCT 957
consensus_4400#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||