cluster # 4405

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Anopheles gambiae
cluster # 4405 cluster # 4405 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4405#0 length = 618 sequences # 2

consensus_4405#1 length = 474 sequences # 1

consensusID : consensus_4405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 618
fasta sequence

                              [TAACGAGAATGGGCTTTAGGAACGTGCAGTAATCGTGCAGAATGGTGGCAAACAATTGGATGGATCTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCTTTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTCTACCAGGTGCNGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGATTTCGTGTCTAGTTTTAAT]

[+] EMBL BX620297             [TAACGAGAATGGGCTTTAGGAACGTGCAGTAATCGTGCAGAATGGTGGCAAACAATTGGATGGATCTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCTTTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTCTACCAGGTGCNGATGTGTGT                                                     ]
[+] EMBL BM632008             [                                                                                                                                ccGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCTTTTATGTACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTCTACGAGGTGCGGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGATTTCGTGTCTAGTTTTAAT]




>consensus_4405#0
TAACGAGAATGGGCTTTAGGAACGTGCAGTAATCGTGCAGAATGGTGGCAAACAATTGGA
TGGATCTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACG
AATTCAAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATAT
TTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGT
ATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAAT
TCCCTTTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAA
TTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTT
TCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACA
TATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAA
AGCTCTACCAGGTGCNGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGAT
TTCGTGTCTAGTTTTAAT

consensusID : consensus_4405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTTTACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTCGAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTTGTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGATCTTTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACTAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGAATATTTACATGATTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC]

[+] EMBL BM596226             [CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTTTACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTCGAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTTGTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGATCTTTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACTAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGAATATTTACATGATTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC]




>consensus_4405#1
CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTT
TACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTC
GAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTT
GTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGATCT
TTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTCAA
ACAGGTCAAACTAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACAC
ACCATGAATATTTACATGATTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTA
TGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4405#0      ------------------------------------------------------------
consensus_4405#1      CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTT 60
                                                                                  

consensus_4405#0      ------------------------------------------------------------
consensus_4405#1      TACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTC 120
                                                                                  

consensus_4405#0      ----------------------------------TAACGAGAATGGGCTTTAGGAACGTG 26
consensus_4405#1      GAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTT 180
                                                        ************* *********** 

consensus_4405#0      CAGTAATCGTGCAGAATGGTGGCAAACAATTG---------------------GATGGAT 65
consensus_4405#1      --GTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGAT 238
                        ************************* ***                      *******

consensus_4405#0      CTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACGAATTC 125
consensus_4405#1      CTTTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTC 298
                      ***********  ************* *********************************

consensus_4405#0      AAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATA 185
consensus_4405#1      AAACAGGTCAAACTAA-CAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATA 357
                      ************* ** *******************************************

consensus_4405#0      CACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCT 245
consensus_4405#1      CACACCATGAATATTTACATGA-TTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCT 416
                      ********* ************ *************************************

consensus_4405#0      CTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCT 305
consensus_4405#1      CTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC-- 474
                      *************************************** ******************  

consensus_4405#0      TTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATT 365
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      GTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTT 425
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      CCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGT 485
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      ATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTC 545
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      TACCAGGTGCNGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGATTTCGT 605
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      GTCTAGTTTTAAT 618
consensus_4405#1      -------------