cluster # 4406

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Anopheles gambiae
cluster # 4406 cluster # 4406 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4406#0 length = 748 sequences # 1

consensus_4406#1 length = 595 sequences # 1
consensus_4406#2 length = 513 sequences # 1

consensusID : consensus_4406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence

                              [TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTTTAGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAAACAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAGAGAAACGTTCACGCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAACGAAAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGCTGGTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAATCGGAAGGGAGATTGTACATTTANCAGAGAGATAGAGAGGACAACCGNAAGAGAGAGAGAGAGTAAGAGCTNGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGACAATGCAAGCATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATGTTGTGTTATAATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACACACACGTAGANCGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNATTGGTTTAACACGGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGCACCCTGNGGTGCAACAGCACGAGCCCCACGNGAGACNGC]

[+] EMBL AL931043             [TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTTTAGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAAACAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAGAGAAACGTTCACGCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAACGAAAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGCTGGTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAATCGGAAGGGAGATTGTACATTTANCAGAGAGATAGAGAGGACAACCGNAAGAGAGAGAGAGAGTAAGAGCTNGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGACAATGCAAGCATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATGTTGTGTTATAATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACACACACGTAGANCGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNATTGGTTTAACACGGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGCACCCTGNGGTGCAACAGCACGAGCCCCACGNGAGACNGC]




>consensus_4406#0
TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTTT
AGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAAA
CAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAGA
GAAACGTTCACGCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAACGA
AAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGCTG
GTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAATCG
GAAGGGAGATTGTACATTTANCAGAGAGATAGAGAGGACAACCGNAAGAGAGAGAGAGAG
TAAGAGCTNGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGACAATGCAAGC
ATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATGTTGTGTTATA
ATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACACACACGTAGAN
CGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNATTGGTTTAACAC
GGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGCACCCTGNGGTG
CAACAGCACGAGCCCCACGNGAGACNGC

consensusID : consensus_4406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAGCATACGGATTTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAGGACACTAAAATAGCTTCGTGCACATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAGAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGGCAAGCGATCAAAACGAAAGAAAGAACAGAACAGAAATAAACTCAAACAAAAACATACACACATACACAAACAAAGGATGCAACACAACAAATGCAAAGGAAACAGGAGTAACAGGAGAAGCAAACAAACAAGCAGTGC]

[+] EMBL BX619033             [AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAGCATACGGATTTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAGGACACTAAAATAGCTTCGTGCACATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAGAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGGCAAGCGATCAAAACGAAAGAAAGAACAGAACAGAAATAAACTCAAACAAAAACATACACACATACACAAACAAAGGATGCAACACAACAAATGCAAAGGAAACAGGAGTAACAGGAGAAGCAAACAAACAAGCAGTGC]




>consensus_4406#1
AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAG
CATACGGATTTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAGGACACTAAAATAGCT
TCGTGCACATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAG
CAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACA
GAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAGAGCGAAA
GGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGT
CAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTG
GTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGGCAAGCGATCAAAACGAAAGAAAG
AACAGAACAGAAATAAACTCAAACAAAAACATACACACATACACAAACAAAGGATGCAAC
ACAACAAATGCAAAGGAAACAGGAGTAACAGGAGAAGCAAACAAACAAGCAGTGC

consensusID : consensus_4406#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [AATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAAACAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGAGAGAGAGATAGAGAGGACAACCGAAAGAGAGAGAGAGAGTAAGAGCTAGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGAAATGCAAGCATGAAGAAATATTGAAAACAATTAAGAAAAAAAAAAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGTTACATAAATTATAAAAAAAACTAACTTACAAAC]

[+] EMBL BX609618             [AATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAAACAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGAGAGAGAGATAGAGAGGACAACCGAAAGAGAGAGAGAGAGTAAGAGCTAGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGAAATGCAAGCATGAAGAAATATTGAAAACAATTAAGAAAAAAAAAAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGTTACATAAATTATAAAAAAAACTAACTTACAAAC]




>consensus_4406#2
AATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAG
ACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCA
AGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAAACAGCGAAAGGTCATGCATCAA
ATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATC
CAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAA
GGGAGAGAGAGATAGAGAGGACAACCGAAAGAGAGAGAGAGAGTAAGAGCTAGAATGTAT
GCGTGTGTGTGGATGTGGTTGTACGAGTGAGGAAATGCAAGCATGAAGAAATATTGAAAA
CAATTAAGAAAAAAAAAAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGT
TACATAAATTATAAAAAAAACTAACTTACAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4406#1      AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAG 60
consensus_4406#2      ------------------------------------------------------------
consensus_4406#0      -TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTT 59
                                                                                  

consensus_4406#1      CATACGGAT--TTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAG----GACACTAAA 114
consensus_4406#2      ------------------------------------------------------------
consensus_4406#0      TAGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAA 119
                                                                                  

consensus_4406#1      ATAGCTTCGTGCAC---ATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAG 171
consensus_4406#2      ------------------------AATGCCACTAACTTACTGACCACATTTCCCTCGAAG 36
consensus_4406#0      ACAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAG 179
                                              ***  * *    **    * * * ***      ***

consensus_4406#1      ACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGC--ATAC 229
consensus_4406#2      ACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGC--ATAC 94
consensus_4406#0      AGAAACGTTCAC-GCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAAC 238
                      * *  *   **  **   *    *   ***   *   ***  * *  * ***    * **

consensus_4406#1      TAATAA-CAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAA-ACA 287
consensus_4406#2      TAATAA-CAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAA-ACA 152
consensus_4406#0      GAAAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGC 298
                       ** ** *   **** *   ****    ** * *    *    **   **     * *  

consensus_4406#1      TGCAAG--AGCGAAAGG-------TCATGCA-TCAAATCCGAAGAAGAGTTTAAACAATC 337
consensus_4406#2      TGCAAAACAGCGAAAGG-------TCATGCA-TCAAATCCGAAGAAGAGTTTAAACAATC 204
consensus_4406#0      TGGTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAAT 358
                      **  *   **** ****       ***  ** ** * * * **  *** **  *  **  

consensus_4406#1      CACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAA 397
consensus_4406#2      CACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAA 264
consensus_4406#0      CGGAAGGGAGATTGTACATTTANCAGAGAGATAG---AGAGGACAAC---CGNAAGAGA- 411
                      *    *       * ***  *  ** * *   *    * ** **      **   ** * 

consensus_4406#1      GAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGG 457
consensus_4406#2      GAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGAGAGAGAGATAGA---GAGGA 321
consensus_4406#0      GAGAGAGAGTAAGAGCTNGAATGTATGCGTGTGTGTGG-ATGTGGTTGTACGAGTGAGGA 470
                      ***** *** *** * * ** **     * * *   ** *    *    *     ** * 

consensus_4406#1      CAA-GCGATCAAAACGAAAGAAAGAAC-AGAACAGAAATAAACTCAAACAAAAACATACA 515
consensus_4406#2      CAA-CCGAAAGAGA-GAGAGAGAGTA--AGAGCTAGAATGTATGCGTGTGTGTGGATGTG 377
consensus_4406#0      CAATGCAAGCATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATG 530
                      ***  * *     * ** * *  * *  * *      *   *                  

consensus_4406#1      CACATACACAAACAAAGGATGCAACACAACAAATGCAAAGGAAACAGG-AGTAACAGGAG 574
consensus_4406#2      GTTGTACG-AGTGAGGAAATGCAAGCATGAAGAAATATTGAAAACAATTAAGAAAAAAAA 436
consensus_4406#0      TTGTGTTATAATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACAC 590
                               *   *    **          * *          ***   *  ** *  * 

consensus_4406#1      AAGCAAACAAACAAGCAGTGC--------------------------------------- 595
consensus_4406#2      AAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGTTACATAAATTATAAAA 496
consensus_4406#0      ACACGTA-GANCGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNAT 649
                      *                 *                                         

consensus_4406#1      ------------------------------------------------------------
consensus_4406#2      AAAACTAACTTACAAAC------------------------------------------- 513
consensus_4406#0      TGGTTTAACACGGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGC 709
                                                                                  

consensus_4406#1      ---------------------------------------
consensus_4406#2      ---------------------------------------
consensus_4406#0      ACCCTGNGGTGCAACAGCACGAGCCCCACGNGAGACNGC 748