These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1044 fasta sequence [AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCGGTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTACGGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTGTGGACCCGGAACCATCTTCATCGAACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTAGACGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGATCTTTACATCTTATGCGTATCGCAACAGGCTGCTCCTCTTCGCTGTCCACCCGGCGAGATCTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGTCGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTCCCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTGCGGTCATTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGAAATATTGCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGAGCCCGTGGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAACTGCCAGTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGACGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGCACTAC] [+] EMBL BX622212 [AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCGGTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTACGGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTGTGGACCCGGAACCATCTTCATCGAACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTAGACGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGATCTTTACATCTTATGCGTATCGCAACAGGCTGCTCCTCTTCGCTGTCCACCCGGCGAGATCTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGTCGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTCCCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGT ] [+] EMBL BX623023 [ CGGCGAGATCTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGTCGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTCCCGCTTTGTCGTGTGCAACGGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTGCGGTCATTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGAAATATTGCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGAGCCCGTGGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAACTGCCAGTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGACGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGCACTAC] consensusID : consensus_4419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [GCAGGCCAGAATCGCCACGAGGNAAGCAACCAACGCTCGAGACTTGCTCGTCCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCTCATCCGGAGGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGATCTTACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCACCGGTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA] [+] EMBL BX469123 [GCAGGCCAGAATCGCCACGAGGNAAGCAACCAACGCTCGAGACTTGCTCGTCCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCTCATCCGGAGGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGATCTTACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCACCGGTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4419#0 AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCG 60 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTAC 120 consensus_4419#1 ----------------------------------------------------------GC 2 * consensus_4419#0 GGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTG-TGGACCCGGAACCA 179 consensus_4419#1 AGGCCAGAATCGCCACGAGGNAAG-CAACCAACGCTCGAGACTTGCTCGTCCTGGAACCA 61 * * * * * * * ** ****** **** ** * * ** ******* consensus_4419#0 TCTTCATCG-AACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTA 238 consensus_4419#1 TCTTCCGCGCAACGACACAATC-CTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTT 120 ***** ** *** * * * ***** * *** *** * ** ***** * consensus_4419#0 GACGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGAT 298 consensus_4419#1 GATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCT---CATCCGGAGGGTTGTGCG 177 ** * **** **** ** ** **** *** * * ***** * * **** consensus_4419#0 CTTTACATCTTATGCGTATCGCAACAG-GCTGCTCCTCTTCGCTGTCCACCCGGCGAGAT 357 consensus_4419#1 CTGTTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGAT 237 ** * * * * *** **** ** **** ** * ******** ** ***** consensus_4419#0 CTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCC 417 consensus_4419#1 CTTACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCA 297 *** * ** * * ******* * ******** * *** ** * * consensus_4419#0 C--GTCGAGACAATGT-GCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGA 474 consensus_4419#1 CCGGTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA--------------------- 336 * *** ** * ** * *** * * *** consensus_4419#0 GTGTTCCCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGG 534 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTT 594 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 TCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTG 654 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 CGGTCATTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGA 714 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 AATATTGCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGA 774 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GCCCGTGGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAA 834 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 CTGCCAGTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGG 894 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 AACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTT 954 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 CCTTGACGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGC 1014 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GCTGTTCCTGCTGTGCACATCGGGCACTAC 1044 consensus_4419#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||