These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGCGGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACCTTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGTTTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGCACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCCAAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAGGGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGTGTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAATGGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTATAAAGTGAATTGATGAATTAAGCTAAAATC] [+] EMBL BX616536 [GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGCGGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACCTTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGTTTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGCACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCCAAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAGGGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGTGTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCG ] [+] EMBL BX608586 [ AATAGCACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCCAAACTATCGCGGAAATGGAAGGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAGGGGCTTGAAGCTTGGCCGCGTACAGGGAATGATATAGACAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGTGTTGGAATTATTAGAAAAAGAGGGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAATGGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTATAAAGTGAATTGATGAATTAAGCTAAAATC] consensusID : consensus_4431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GGATTAATCTTTTCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAATCGAACCAATGGATCCAAGAGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAAAGAGAGAGCCCTAAAGAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAG] [-] EMBL CNS08DPQ [GGATTAATCTTTTCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAATCGAACCAATGGATCCAAGAGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAAAGAGAGAGCCCTAAAGAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4431#0 GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGC 60 consensus_4431#1 ------------------------------------------------------------ consensus_4431#0 GGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACC 120 consensus_4431#1 ------------------------------------------------------------ consensus_4431#0 TTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGT 180 consensus_4431#1 ------------------------------------------------------------ consensus_4431#0 TTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGC 240 consensus_4431#1 ------------------------------------------------------------ consensus_4431#0 ACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCC 300 consensus_4431#1 ------------------------------------------------------------ consensus_4431#0 AAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCG 360 consensus_4431#1 -----------------------------------------GGATTAATCTTTTCATTCG 19 *********** ******* consensus_4431#0 TCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAG 420 consensus_4431#1 TCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAATCGAACCAATGGATCCAAG 79 *************************************** ****** ** ********** consensus_4431#0 GGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGA 480 consensus_4431#1 AGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAGAGAGAGAGCGAGAGAGAGA 139 ********* ***** *** **************************** * ******** consensus_4431#0 GAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGT 540 consensus_4431#1 GAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGA--GAGAGTGAGAGAGAGAAAGAGAGAGC 197 ***** ******* ************** *** ** * ***** *** * * * consensus_4431#0 GTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAAT 600 consensus_4431#1 CCTAAA-------GAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAGAGAA-AGAGA 249 * * ** * **** * * ** * ** * ***** *** consensus_4431#0 GGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTAT 660 consensus_4431#1 GAGAGAGAAAGAGAGAGATAG-AGAGAG-------------------------------- 276 * * * ** ** * **** ***** consensus_4431#0 AAAGTGAATTGATGAATTAAGCTAAAATC 689 consensus_4431#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||