cluster # 444

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Anopheles gambiae
cluster # 444 cluster # 444 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_444#0 length = 961 sequences # 1

consensus_444#1 length = 619 sequences # 1

consensusID : consensus_444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 961
fasta sequence

                              [CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTCCATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAAGCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGTTTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTTTTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAAGCCACGACTCACGCGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTGAGCTACACAAACACAAAACTGCGAAACCAGCAAATCGAAATGTAAGATNGACGAAAAGAAATCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGGCATTGTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTTTCAGCNTTGGCACTTGGCCNGTCGTTTAACAAACGTTCCGTGACTTGGGGAAAAACCCTNGGGGNGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTTTTCGGCCACGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAAAGTTTGGGCAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGGCGGGTGTGA]

[+] EMBL BX467489             [CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTCCATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAAGCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGTTTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTTTTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAAGCCACGACTCACGCGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTGAGCTACACAAACACAAAACTGCGAAACCAGCAAATCGAAATGTAAGATNGACGAAAAGAAATCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGGCATTGTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTTTCAGCNTTGGCACTTGGCCNGTCGTTTAACAAACGTTCCGTGACTTGGGGAAAAACCCTNGGGGNGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTTTTCGGCCACGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAAAGTTTGGGCAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGGCGGGTGTGA]




>consensus_444#0
CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTC
CATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAA
GCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGT
TTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTT
TTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCA
AACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGG
TTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCG
TACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAAGCCACGACTCACGCGTTGAATA
TAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTGA
GCTACACAAACACAAAACTGCGAAACCAGCAAATCGAAATGTAAGATNGACGAAAAGAAA
TCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGGCATT
GTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTTTCAG
CNTTGGCACTTGGCCNGTCGTTTAACAAACGTTCCGTGACTTGGGGAAAAACCCTNGGGG
NGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTTTTCGGCCA
CGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAAAGTTTGGG
CAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGGCGGGTGTG
A

consensusID : consensus_444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CAAGATAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTATCTTTGCTTTTGCCTTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTAAAAAGCCACGACTCACACGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTACTAAAATGTACATGCAGTGGAGCTACACAAACACAAAACTGCGAAACCGAAGCAAATCGAAATGTAAGATGAGAAAGAATCTCTATTTATTAACAAACAAAAAAAAGAAGCAAACAATCGAACATCATTTATCTAGTTCTATTATCGCTGCTTATATTACTCTATTATTAGCATCCACTACTACTATTATTATTATTATTGCAGCGCTCGTGTATAACGCATGTTGCTTTTACACGCTCTCCTCTCTTGTTGAAACTAGTGGCTAAAGAAATCCAACCTCATCCTCCTCCAACAGACATGAGCTGCTTTTGCATTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAGATATGTACAAGAGTTTTAC]

[+] EMBL BX612857             [CAAGATAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTATCTTTGCTTTTGCCTTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTAAAAAGCCACGACTCACACGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTACTAAAATGTACATGCAGTGGAGCTACACAAACACAAAACTGCGAAACCGAAGCAAATCGAAATGTAAGATGAGAAAGAATCTCTATTTATTAACAAACAAAAAAAAGAAGCAAACAATCGAACATCATTTATCTAGTTCTATTATCGCTGCTTATATTACTCTATTATTAGCATCCACTACTACTATTATTATTATTATTGCAGCGCTCGTGTATAACGCATGTTGCTTTTACACGCTCTCCTCTCTTGTTGAAACTAGTGGCTAAAGAAATCCAACCTCATCCTCCTCCAACAGACATGAGCTGCTTTTGCATTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAGATATGTACAAGAGTTTTAC]




>consensus_444#1
CAAGATAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAA
GTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTATCT
TTGCTTTTGCCTTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTT
TTTAAAAAGCCACGACTCACACGTTGAATATAAAAAACCGACACAACCATACTATACTAT
ACTACTACTAAAATGTACATGCAGTGGAGCTACACAAACACAAAACTGCGAAACCGAAGC
AAATCGAAATGTAAGATGAGAAAGAATCTCTATTTATTAACAAACAAAAAAAAGAAGCAA
ACAATCGAACATCATTTATCTAGTTCTATTATCGCTGCTTATATTACTCTATTATTAGCA
TCCACTACTACTATTATTATTATTATTGCAGCGCTCGTGTATAACGCATGTTGCTTTTAC
ACGCTCTCCTCTCTTGTTGAAACTAGTGGCTAAAGAAATCCAACCTCATCCTCCTCCAAC
AGACATGAGCTGCTTTTGCATTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAG
ATATGTACAAGAGTTTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_444#0      CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTC 60
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      CATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAA 120
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      GCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGT 180
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      TTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTT 240
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      TTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCA 300
consensus_444#1      -------------------------------CAAGATAGGTTTAACCAAGGAAACAAGCA 29
                                                    **** ************************

consensus_444#0      AACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGG 360
consensus_444#1      AACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGG 89
                     ************************************************************

consensus_444#0      TTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCG 420
consensus_444#1      TTTAGTAGCAGAGTTTAGGTGTACGTTATCTTTGCTTTTGCCTTTTGCGCATCCCGGTCG 149
                     *************************** ************** *****************

consensus_444#0      TACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAA-GCCACGACTCACGCGTTGAAT 479
consensus_444#1      TACTACGCACGCGTGTTAACTATTAGTTTTTTTTAAAAAGCCACGACTCACACGTTGAAT 209
                     ********************************** *** ************ ********

consensus_444#0      ATAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTG 539
consensus_444#1      ATAAAAAACCGACACAACCATACTATACTATACTA---CTACTAAAATGTACATGCAGTG 266
                     ***********************************   **********************

consensus_444#0      -AGCTACACAAACACAAAACTGCGAAACC--AGCAAATCGAAATGTAAGATNGACGAAAA 596
consensus_444#1      GAGCTACACAAACACAAAACTGCGAAACCGAAGCAAATCGAAATGTAAGATGAGAAAGAA 326
                      ****************************  ********************     * **

consensus_444#0      GAAATCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGG 656
consensus_444#1      TCTCTATTTATTAACAAACAAAAAAAAGAAGCAAACAATCGAACATCATTTATCTAGTTC 386
                         * *    *  *  *   **  ****  ***** *    * *  *   * * **   

consensus_444#0      CATTGTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTT 716
consensus_444#1      TATTATCGCTGCTTATATTACTCTATTATTAGCATCCACTACTACTATTATTATTATTAT 446
                      *** * *  *        *     *****  *  *   *             *** * *

consensus_444#0      T-CAGCNTTGGCACTTG--GCCNGTCG-TTTAACAAACGTTCCGTGACTTGGGGAAAAAC 772
consensus_444#1      TGCAGCGCTCGTGTATAACGCATGTTGCTTTTACACGCTCTCC-TCTCTTGTTGAA--AC 503
                     * ****  * *    *   **  ** * *** ***  *  *** *  ****  ***  **

consensus_444#0      CCTNGGGGNGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTT 832
consensus_444#1      TAGTGGCTAAAGAAATCCAACCTCATCCT---CCTCCAACAGACATGAGCTGCTTTTGCA 560
                         **       *  **** ** *  *    * *    *** *   *  * *       

consensus_444#0      TTCGGCCACGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAA 892
consensus_444#1      TTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAGATATGTACAAGAGTTTTAC- 619
                     **  *   *   * ******     **  *  * *     *    *    *  **     

consensus_444#0      AGTTTGGGCAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGG 952
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      CGGGTGTGA 961
consensus_444#1      ---------