cluster # 4447

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Anopheles gambiae
cluster # 4447 cluster # 4447 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4447#0 length = 803 sequences # 1

consensus_4447#1 length = 666 sequences # 2

consensusID : consensus_4447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence

                              [ACTGGGTTCGAAAATGTGTGGTGCAATTTCGGCACCATAATGTTGCTTCTGAGAAGAATCTTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCGCCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGATGATGCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTCAAACGATTGAAGCTGAACGACACCGATCGGTATACGGACGAGTTTCCTTTTCTGTCTATTTGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTGATAGCGAAGATAGGTTGGCTTACGCGCACGGGTACGATAAGATGAGCGTACTGTGGGCAACCCGACCGGATCTGTATGTTTCCCGACACTGGGCGGGTGTACCATCCGGCCCCGGAACGGTACGGGTCGATAGGCCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGCTCTTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAGCTCGATCAGGACTGGTGGAAGGAGACGTACATCGGCAAGAGGTCGCAGCAAGACTGACTGCTAGCGATGACCAAAGAAAGGGAGCACTGTTTTGTAGAATAATATGAAAATGTGATACAATATTGCCGCACAAATGTTGAGATTAAATGTGTTGACTGTTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTC]

[+] EMBL CNS08QED             [ACTGGGTTCGAAAATGTGTGGTGCAATTTCGGCACCATAATGTTGCTTCTGAGAAGAATCTTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCGCCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGATGATGCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTCAAACGATTGAAGCTGAACGACACCGATCGGTATACGGACGAGTTTCCTTTTCTGTCTATTTGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTGATAGCGAAGATAGGTTGGCTTACGCGCACGGGTACGATAAGATGAGCGTACTGTGGGCAACCCGACCGGATCTGTATGTTTCCCGACACTGGGCGGGTGTACCATCCGGCCCCGGAACGGTACGGGTCGATAGGCCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGCTCTTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAGCTCGATCAGGACTGGTGGAAGGAGACGTACATCGGCAAGAGGTCGCAGCAAGACTGACTGCTAGCGATGACCAAAGAAAGGGAGCACTGTTTTGTAGAATAATATGAAAATGTGATACAATATTGCCGCACAAATGTTGAGATTAAATGTGTTGACTGTTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTC]




>consensus_4447#0
ACTGGGTTCGAAAATGTGTGGTGCAATTTCGGCACCATAATGTTGCTTCTGAGAAGAATC
TTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCG
CCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGATGATGCGAGAATCA
AAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTCAAACGATTGA
AGCTGAACGACACCGATCGGTATACGGACGAGTTTCCTTTTCTGTCTATTTGTGGCCGGG
AACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTG
ATAGCGAAGATAGGTTGGCTTACGCGCACGGGTACGATAAGATGAGCGTACTGTGGGCAA
CCCGACCGGATCTGTATGTTTCCCGACACTGGGCGGGTGTACCATCCGGCCCCGGAACGG
TACGGGTCGATAGGCCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGCTCTTCGTTTACA
TTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAG
CTCGATCAGGACTGGTGGAAGGAGACGTACATCGGCAAGAGGTCGCAGCAAGACTGACTG
CTAGCGATGACCAAAGAAAGGGAGCACTGTTTTGTAGAATAATATGAAAATGTGATACAA
TATTGCCGCACAAATGTTGAGATTAAATGTGTTGACTGTTAAAAAAAAAAAAAAAAAAAA
AAAGGCCACATGTCCCCCCCCTC

consensusID : consensus_4447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 666
fasta sequence

                              [GCACCATAATGTTGCTTCTGAGAAGAATCTTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCGCCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGCTCTTCCTAGATGATGCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTCAAAAGATTGAAGCTAAACGACACCGACCGGTATAGGGACGAGTTTCCGTTCCTGTCTATTTGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTGATAGCGAAGATAGGTTAGCTTACGCGCACGGGTACGATAAGATGAGCGTACCGTGGCAACCCGACCGGATCTGTATGTTTCCCGACACCGGGCGGGTGTACCATCCGGCCCCGGAACGGTACGGGTCGATAGGGCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGTTCTTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAGCTCGATCAGGACTGGTGGGAANGAGACGTACATCGGCAAGANGTCGCAGCAAGACTGACTGCTAGCGATGACCAAGGAAAGGGAGTAC]

[+] EMBL BX620824             [GCACCATAATGTTGCTTCTGAGAAGAATCTTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCGCCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGCTCTTCCTAGATGATGCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTCAAAAGATTGAAGCTAAACGACACCGACCGGTATAGGGACGAGTTTCCGTTCCTGTCTATTTGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTGATAGCGAAGATAGGTTAGCTTACGCGCACGGGTACGATAAGATGAGCGTACCGTGGCAACCCGACCGGATCTGTATGTTTCCCGACACCGGGCGGGTGTACCATCCGGCCCCGGAACGGTACGGGTCGATAGGGCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGTTCTTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAGCTCGATCAGGACTGGTGGGAANGAGACGTACATCGGCAAGANGTCGCAGCAAGACTGACTGCTAG                       ]
[+] EMBL BX628124             [   CCATAATGTTGCTTCTGAGAAGAATCTTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCGCCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGCTCTTCCTAGATGATGCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTCAAAAGATTGAAGCTAAACGACACCGACCGGTATAGGGACGAGTTTCCGTTCCTGTCTATTTGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTGATAGCGAAGATAGGTTAGCTTACGCGCACGGGTACGATAAGATGAGCGTACCGTGGCAACCCGACCGGATCTGTATGTTTCCCGACACCGGGCGGGTGTACCATCCGGCCCCGGAACGGTACGGGTCGATAGGGCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGTTCTTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAGCTCGATCAGGACTGGT GGAAGGAGACGTACATCGGCAAGAGGTCGCAGCAAGACTGACTGCTAGCGATGACCAAGGAAAGGGAGTAC]




>consensus_4447#1
GCACCATAATGTTGCTTCTGAGAAGAATCTTTTCCCCAACGGCACAAATCTGCCGCCGGG
TCGCGTACGTACAGGGCCAATCGCCGGCGCCGAAAATACGCGAATATTTCTACTACATCG
ATCACGAAGGGATGCTCTTCCTAGATGATGCGAGAATCAAAAACTTCACCTCCTGCTTCA
AGGAGAAGCAATTTCTGGAGTTTTTCTTCAAAAGATTGAAGCTAAACGACACCGACCGGT
ATAGGGACGAGTTTCCGTTCCTGTCTATTTGTGGCCGGGAACGAAATTTTATCCGCTGTG
ACGATCTACCGATCGTGTTTACACATGTTGTGAAAATTGATAGCGAAGATAGGTTAGCTT
ACGCGCACGGGTACGATAAGATGAGCGTACCGTGGCAACCCGACCGGATCTGTATGTTTC
CCGACACCGGGCGGGTGTACCATCCGGCCCCGGAACGGTACGGGTCGATAGGGCTGGTCC
GGTCGAAGCTTGCGATCGAGCTGAGTTCTTCGTTTACATTCCAAAATGGTGAAGATCGTC
CGCCGACACACTTCCGGTGGAAGGAGCACAATTACGAGCTCGATCAGGACTGGTGGGAAN
GAGACGTACATCGGCAAGANGTCGCAGCAAGACTGACTGCTAGCGATGACCAAGGAAAGG
GAGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4447#0      ACTGGGTTCGAAAATGTGTGGTGCAATTTCGGCACCATAATGTTGCTTCTGAGAAGAATC 60
consensus_4447#1      -------------------------------GCACCATAATGTTGCTTCTGAGAAGAATC 29
                                                     *****************************

consensus_4447#0      TTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCG 120
consensus_4447#1      TTTTCCCCAACGGCACAAATCTGCCGCCGGGTCGCGTACGTACAGGGCCAATCGCCGGCG 89
                      ************************************************************

consensus_4447#0      CCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATG----------ATGAT 170
consensus_4447#1      CCGAAAATACGCGAATATTTCTACTACATCGATCACGAAGGGATGCTCTTCCTAGATGAT 149
                      *********************************************          *****

consensus_4447#0      GCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTC 230
consensus_4447#1      GCGAGAATCAAAAACTTCACCTCCTGCTTCAAGGAGAAGCAATTTCTGGAGTTTTTCTTC 209
                      ************************************************************

consensus_4447#0      AAACGATTGAAGCTGAACGACACCGATCGGTATACGGACGAGTTTCCTTTTCTGTCTATT 290
consensus_4447#1      AAAAGATTGAAGCTAAACGACACCGACCGGTATAGGGACGAGTTTCCGTTCCTGTCTATT 269
                      *** ********** *********** ******* ************ ** *********

consensus_4447#0      TGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTT 350
consensus_4447#1      TGTGGCCGGGAACGAAATTTTATCCGCTGTGACGATCTACCGATCGTGTTTACACATGTT 329
                      ************************************************************

consensus_4447#0      GTGAAAATTGATAGCGAAGATAGGTTGGCTTACGCGCACGGGTACGATAAGATGAGCGTA 410
consensus_4447#1      GTGAAAATTGATAGCGAAGATAGGTTAGCTTACGCGCACGGGTACGATAAGATGAGCGTA 389
                      ************************** *********************************

consensus_4447#0      CTGTGGGCAACCCGACCGGATCTGTATGTTTCCCGACACTGGGCGGGTGTACCATCCGGC 470
consensus_4447#1      CCGTGG-CAACCCGACCGGATCTGTATGTTTCCCGACACCGGGCGGGTGTACCATCCGGC 448
                      * **** ******************************** ********************

consensus_4447#0      CCCGGAACGGTACGGGTCGATAGGCCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGCTC 530
consensus_4447#1      CCCGGAACGGTACGGGTCGATAGGGCTGGTCCGGTCGAAGCTTGCGATCGAGCTGAGTTC 508
                      ************************ ******************************** **

consensus_4447#0      TTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCA 590
consensus_4447#1      TTCGTTTACATTCCAAAATGGTGAAGATCGTCCGCCGACACACTTCCGGTGGAAGGAGCA 568
                      ************************************************************

consensus_4447#0      CAATTACGAGCTCGATCAGGACTGGTGG-AAGGAGACGTACATCGGCAAGAGGTCGCAGC 649
consensus_4447#1      CAATTACGAGCTCGATCAGGACTGGTGGGAANGAGACGTACATCGGCAAGANGTCGCAGC 628
                      **************************** ** ******************* ********

consensus_4447#0      AAGACTGACTGCTAGCGATGACCAAAGAAAGGGAGCACTGTTTTGTAGAATAATATGAAA 709
consensus_4447#1      AAGACTGACTGCTAGCGATGACCAAGGAAAGGGAGTAC---------------------- 666
                      ************************* ********* **                      

consensus_4447#0      ATGTGATACAATATTGCCGCACAAATGTTGAGATTAAATGTGTTGACTGTTAAAAAAAAA 769
consensus_4447#1      ------------------------------------------------------------
                                                                                  

consensus_4447#0      AAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTC 803
consensus_4447#1      ----------------------------------