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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 920 fasta sequence
[TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGGCAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCGGAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAGGCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAACTATTAATTTTCTTTTATCTTAA-TAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGCTACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGACTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANTCTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTCTAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAAACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCTAACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNGNGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACCCCGGAAAAACCCGNAAANCA]
[+] EMBL BX609763 [TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGGCAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCGGAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAGGCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAACTATTAATTTTCTTTTATCTTAA TAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTG ]
[+] EMBL AL931070 [ ccgaggnGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCTCGGGTTTACTTGTATAAACGAACTATT ATTTTCTTTTATCTTAATTAAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTTTAACGCTACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGACTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANTCTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTCTAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAAACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCTAACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNGNGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACCCCGGAAAAACCCGNAAANCA]
consensusID : consensus_4450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence
[GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTTTTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA]
[+] EMBL BX626405 [GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTTTTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4450#0 TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGG 60
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 CAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCG 120
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 GAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAG 180
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 GCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTT 240
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 GATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGT 300
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 TACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAAC 360
consensus_4450#1 ------------GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAAC 48
*** ****************** ********************* ***
consensus_4450#0 TATTAATTTTCTTTTATCTTAATAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGA 420
consensus_4450#1 TATTA-TTTTCTTTTATCTTAATAAAAAAA-GTACGAACTTTCGTCCGAGAGCAAAATGA 106
***** ************************ ************* ***************
consensus_4450#0 AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGC 480
consensus_4450#1 AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTG 166
*********************************************** ***** *
consensus_4450#0 TACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGA 540
consensus_4450#1 TGTNTAA----------------------------------------------------- 173
*
consensus_4450#0 CTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANT 600
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 CTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTC 660
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 TAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAA 720
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 ACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCT 780
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 AACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNG 840
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 NGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACC 900
consensus_4450#1 ------------------------------------------------------------
consensus_4450#0 CCGGAAAAACCCGNAAANCA 920
consensus_4450#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||