These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence [GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCGTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNTACCACCCGTGAGCATGAGCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCCGTTAGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGAGAGAGAGGAAGAGAGGAAGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTTTAGCACGAGTCGAAACCCCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAAACGCCACGTAAAACGTGCAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA] [+] EMBL BX468130 [GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCGTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNTACCACCCGTGAGCATGAGCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCCGTTA ] [+] EMBL BX626327 [ CGCG TGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCC TTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGC TACCGCTACCACCCGTGAGCATGAGCGTCGTGGCCGTCG TTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTC CC AGAAGCT GGTG AAGA GACGACC GGTGG CGTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGAGAGAGAGGAAGAGAGGAAGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTTTAGCACGAGTCGAAACCCCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAAACGCCACGTAAAACGTGCAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA] consensusID : consensus_4468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCTACCGCTACCACCCGTGAGCATGAGCGTCGTGGCCGTCGTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCCCAGAAGCTGGTGAAGAGACGACCGGTGGCGTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGAGGAAGAGAGGAAGAGA] [+] EMBL BM655671 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCTACCGCTACCACCCGTGAGCATGAGCGTCGTGGCCGTCGTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCCCAGAAGCTGGTGAAGAGACGACCGGTGGCGTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGAGGAAGAGAGGAAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4468#0 -------GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTG 53 consensus_4468#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGT-GGTTGCGCTAGCGCTTG 59 ** * * ** ** ************* ***************** consensus_4468#0 CGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAA 113 consensus_4468#1 CGTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAA 119 ************************* ** ******************************* consensus_4468#0 GCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTC 173 consensus_4468#1 GCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTC 179 ************************************************************ consensus_4468#0 TAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAA 233 consensus_4468#1 TAATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAA 239 ************************************** ********************* consensus_4468#0 ACTTACCACACCGGAGTGTG----------CGTGTCCCGTGTGTCCGTGTGGCTTCGGTG 283 consensus_4468#1 ACTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTG 299 ******************** ****************************** consensus_4468#0 AGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAG 343 consensus_4468#1 AGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAG 359 ************************************************************ consensus_4468#0 CGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACC 403 consensus_4468#1 CGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACC 419 ************************************************************ consensus_4468#0 CCGTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNT 463 consensus_4468#1 CC-TTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGC-TACCGCT 477 ** ************************************************* ***** * consensus_4468#0 ACCACCCGTGAGCATGAGCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGA 523 consensus_4468#1 ACCACCCGTGAGCATGAGCGTCGTGGCCGTCGTT-GCGGTGGCCTATCGATACACTTGGA 536 ************************** ******* ************************* consensus_4468#0 ATCGCGAGATCGTGTTCAACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCC 583 consensus_4468#1 ATCGCGAGATCGTGTTCAACTCCC---AGAAGCT-GGTGAAGA--GACGACCGG-TGGC- 588 ********************** * ******* ****** ********* **** consensus_4468#0 GTTAGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGA 643 consensus_4468#1 GTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGA 648 *** ************************************************ ******* consensus_4468#0 GAGAGAGGAAGAGAGGAAGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTT 703 consensus_4468#1 GGAAGAGAGGAAGAGA-------------------------------------------- 664 * **** **** consensus_4468#0 TAGCACGAGTCGAAACCCCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAA 763 consensus_4468#1 ------------------------------------------------------------ consensus_4468#0 ACGCCACGTAAAACGTGCAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA 818 consensus_4468#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||