cluster # 4470

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Anopheles gambiae
cluster # 4470 cluster # 4470 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4470#0 length = 780 sequences # 1

consensus_4470#1 length = 740 sequences # 1
consensus_4470#2 length = 660 sequences # 1

consensusID : consensus_4470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 780
fasta sequence

                              [ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAATTAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAATGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTGTTGCATTTACTGGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAACAATTGTAATACATGTCAGGTCG]

[+] EMBL BX613309             [ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAATTAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAATGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTGTTGCATTTACTGGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAACAATTGTAATACATGTCAGGTCG]




>consensus_4470#0
ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCC
AATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAA
GTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCACGGTTGGCAA
TTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATAC
GGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGATTTGGTTGATGTTTTGAAGCTAG
GTTCAATTCCAATGGATGCATTTTCAAGCCAATTAATGATTAATAACCATAAATATCCTG
ATATAGAAGGTATGATCGCCAATGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACG
ATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATA
TAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTA
ACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCA
TAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGC
TGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTGTTGCATTTACT
GGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAACAATTGTAATACATGTCAGGTCG

consensusID : consensus_4470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence

                              [AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTGAATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAGTAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATTTAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATCGCTACGCGTAGAGCATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGATGGTAAGAGCAATGGGCTTGGCCAATGGTGGACAAGTTGCCCAGTTNTGAAGCGAAGGAGGCTTTGCANNAAGTTGTGCTCGCAAGCGTTNCGNAACGATNGGGTTGANCGTGATCGGNAANAAGGGTGGCATCAGNGCAN]

[+] EMBL BX469324             [AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTGAATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAGTAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATTTAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATCGCTACGCGTAGAGCATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGATGGTAAGAGCAATGGGCTTGGCCAATGGTGGACAAGTTGCCCAGTTNTGAAGCGAAGGAGGCTTTGCANNAAGTTGTGCTCGCAAGCGTTNCGNAACGATNGGGTTGANCGTGATCGGNAANAAGGGTGGCATCAGNGCAN]




>consensus_4470#1
AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTG
AATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCA
GTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA
CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCA
CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG
GCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGT
TTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAG
TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATT
TAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTG
CCGATCGCTACGCGTAGAGCATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGAT
GGTAAGAGCAATGGGCTTGGCCAATGGTGGACAAGTTGCCCAGTTNTGAAGCGAAGGAGG
CTTTGCANNAAGTTGTGCTCGCAAGCGTTNCGNAACGATNGGGTTGANCGTGATCGGNAA
NAAGGGTGGCATCAGNGCAN

consensusID : consensus_4470#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGCCCACGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAAATAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGTGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTG]

[+] EMBL BM644248             [CCGCCCACGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAAATAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGTGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTG]




>consensus_4470#2
CCGCCCACGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCA
ACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTC
ACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCA
GGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGATTTGGTTGATGT
TTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAAATAATGATTAATAACCA
TAAATATCCTGATATAGAAGGTATGATCGCCAGTGTGCAGATAGATGATGATTTAAAGTG
TGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTAC
GCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGA
AATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGA
AAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATG
CCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4470#0      ------------------------------------------------------------
consensus_4470#2      ------------------------------------------------------------
consensus_4470#1      AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTG 60
                                                                                  

consensus_4470#0      ----------ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCA 50
consensus_4470#2      ----------------------------------------------------------CC 2
consensus_4470#1      AATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCA 120
                                                                                * 

consensus_4470#0      GTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA 110
consensus_4470#2      GCCCA-CGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA 61
consensus_4470#1      GTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA 180
                      * **  * *     **********************************************

consensus_4470#0      CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCA 170
consensus_4470#2      CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCA 121
consensus_4470#1      CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCA 240
                      ******************************************************** ***

consensus_4470#0      CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG 230
consensus_4470#2      CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG 181
consensus_4470#1      CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG 300
                      ************************************************************

consensus_4470#0      GCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGA-TTTGGTTGATGT 289
consensus_4470#2      GCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGA-TTTGGTTGATGT 240
consensus_4470#1      GCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGT 360
                      ************************** ************** ***** ************

consensus_4470#0      TTTGAAGCTAGGTTCAATTCCAATGGATGCATTT-TCAAGCCAATTAAT----GATTAA- 343
consensus_4470#2      TTTGAAGCTAGGTTCAATTCCAATGGATGCATTT-TCAAGCCAAATAAT----GATTAA- 294
consensus_4470#1      TTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAG 420
                      ********************************** ***** * *  * *    ****** 

consensus_4470#0      TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAA-TGTGCAGATAGATGATGATT 402
consensus_4470#2      TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAG-TGTGCAGATAGATGATGATT 353
consensus_4470#1      TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATT 480
                      **************************************  *********   ********

consensus_4470#0      TAAAGTGTGTAG-CAAACGATTATTT--AAACGCAATTCCGATGGTTCATGAGGAAGTTG 459
consensus_4470#2      TAAAGTGTGTAG-CAAACGATTATTT--AAACGCAATTCCGATGGTTCATGAGGAAGTTG 410
consensus_4470#1      TAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTG 540
                      ************ ********** **  ********************************

consensus_4470#0      CCGAT-GCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGC 518
consensus_4470#2      CCGAT-GCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGC 469
consensus_4470#1      CCGATCGCTACGCGTAGAG-CATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGA 599
                      ***** *************  ***  *  ** *       * ****    *  ** * * 

consensus_4470#0      TGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGC 578
consensus_4470#2      TGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGC 529
consensus_4470#1      TGGTAAGAGCAA--TGGGCTTGGCCAATGG-TGGACAAGTTGCCCAGTTNTGAAGC---- 652
                      ***  *    **  *    **  * **  * * ** *  **   **    * ***     

consensus_4470#0      TTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTA 638
consensus_4470#2      TTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTA 589
consensus_4470#1      ---------GAAGGAGGCTTTGCANNAAGTTGTGCTCGCA-AGCGTTNCGNAACG----A 698
                               ***  *** *    *  *  * * **  *   **   * *  ** *    *

consensus_4470#0      CAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCA 698
consensus_4470#2      CAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCA 649
consensus_4470#1      TNGGGTTGAN--CGTGATCGGNAANAAGGGTGGCATCAGNGCAN---------------- 740
                        *    **   * *** * *    *   * * ****   ***                 

consensus_4470#0      AAAGCGCGTTGTTGCATTTACTGGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAAC 758
consensus_4470#2      AAAGCGCGTTG------------------------------------------------- 660
consensus_4470#1      ------------------------------------------------------------
                                                                                  

consensus_4470#0      AATTGTAATACATGTCAGGTCG 780
consensus_4470#2      ----------------------
consensus_4470#1      ----------------------