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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence
[TCACCGTGGGACCAACAATTCGTTCCAGATTAAAGCCTCGTCACCGCTGGCTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCATCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGTGGAGCCTTTTTGAATTTAGTCGAACCGGCCAGTGAAATGAGTTCCTGGCAGGCGGAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATCACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAGCAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAGAAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTTATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCTGATCGATGGTGTGCGGGAGAACAAGCAGCACTGGATCGAGCTGGCCCAAAGCGCGAAGGAGGCGTACGCAAACAACAATAACACGAGCGAAAACAATAATAACAACAAGAGCCCCTGCACGGACCATGCGGAGGACGACGGCCACCAGCAAGAATGGGGGTGGTGGAGTGCGTCCGCAGCCCGCTCGGATCACCAGCAAGTAGCCACGAGTCNGCCACCACTAACAGTAGTC]
[+] EMBL BX625740 [TCACCGTGGGACCAACAATTCGTTCCAGATTAAAGCCTCGTCACCGCTGGCTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCATCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGTGGAGCCTTTTTGAATTTAGTCGAACCGGCCAGTGAAATGAGTTCCTGGCAGGCGGAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATCACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAGCAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAGAAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTTATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCTGATCGATGGTGTGCGGGAGAACAAGCAGCACTGGATCGAGCTGGCCCAAAGCGCGAAGGAGGCGTACGCAAACAACAATAACACGAGCGAAAACAATAATAACAACAAGAGCCCCTGCACGGACCATGCGGAGGACGACGGCCACCAGCAAGAATGGGGGTGGTGGAGTGCGTCCGCAGCCCGCTCGGATCACCAGCAAGTAGCCACGAGTCNGCCACCACTAACAGTAGTC]
[+] EMBL BX621301 [TCACCGTGGGACCAACAATTCGTTCCAGATTAAAGCCTCGTCACCGCTGGCTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCATCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGTGGAGCCTTTTTGAATTTAGTCGAACCGGCCAGTGAAATGAGTTCCTGGCAGGCGGAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATCACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAGCAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAGAAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTTATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCT ]
consensusID : consensus_4481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[CGCCAGGTTATCTGGATACGTGGGACACAATCGTTCAGATTAAGCTCGTCACGCTGGTCANCTCTACTCGACGTCACGATGGAGCAACATCACTTCGACAGTGTCTGATGATCATCAACAGCCCGGCAAACAGATACTTGTCAACATGTTCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGGCATCCTATTCAACGATCTGGCGNTTATTTCAGGAAACGTTGGAGCCTTTTTTGAATTTTAGTTNCGAACCGGGCCAGTGAAATGAGTTTCCTGGCCAGGCTGGGAGGGAAGCCCACTGCTCCGGCTTNGGCTTGCTGCCCGGCCGGAATTGGAAGGCCATTGGAACCCGGTTTCCTTGGGCAGGAACCCCTTGGTTTCCCCCTGGGGCCCCCAAAATTTTTCTCAAAAAACCCNAAAAAAGTGGGCGCCCCCGGGTGTGNGGGGGGGGGGCACAACAAAAAAAATTTATCTCCCCGCGCGGNGAAAAAAGGAAAACAAAAAAGTGGCTCCNC]
[+] EMBL AL931096 [CGCCAGGTTATCTGGATACGTGGGACACAATCGTTCAGATTAAGCTCGTCACGCTGGTCANCTCTACTCGACGTCACGATGGAGCAACATCACTTCGACAGTGTCTGATGATCATCAACAGCCCGGCAAACAGATACTTGTCAACATGTTCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGGCATCCTATTCAACGATCTGGCGNTTATTTCAGGAAACGTTGGAGCCTTTTTTGAATTTTAGTTNCGAACCGGGCCAGTGAAATGAGTTTCCTGGCCAGGCTGGGAGGGAAGCCCACTGCTCCGGCTTNGGCTTGCTGCCCGGCCGGAATTGGAAGGCCATTGGAACCCGGTTTCCTTGGGCAGGAACCCCTTGGTTTCCCCCTGGGGCCCCCAAAATTTTTCTCAAAAAACCCNAAAAAAGTGGGCGCCCCCGGGTGTGNGGGGGGGGGGCACAACAAAAAAAATTTATCTCCCCGCGCGGNGAAAAAAGGAAAACAAAAAAGTGGCTCCNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4481#0 -------TCACCGTGGGACCAACAATTCGTTC---CAGATTAAAGCCTCGTCACCGCTGG 50
consensus_4481#1 CGCCAGGTTATCTGGATACGTGGGACACAATCGTTCAGATTAAG--CTCGTCAC-GCTGG 57
* * * * ** * * ** ******** ******** *****
consensus_4481#0 CTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCA 110
consensus_4481#1 -TCANCTCTACTCGACGTC-ACGATGGAGCAACATCACTTCGAC-AGTGTCTGATGATCA 114
*** ************** *********** ************ ***************
consensus_4481#0 TCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGA 170
consensus_4481#1 TCAACAGCCC-GGCAAACAGATACTTGTCAACATGTTCTCGGAGGACTACAGCCGTGTGA 173
********** ***** ******** ******** ***********************
consensus_4481#0 TACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGT- 229
consensus_4481#1 TACGCGTGCTGGAAGATGGCATCCTATTCAACGATCTGGC-GNTTATTTCAGGAAACGTT 232
****************** ******** ** ********* * ****************
consensus_4481#0 GGAGCCTTTTT-GAATTTAG---TCGAACCGG-CCAGTGAAATGAGTT-CCTGGCAGGCG 283
consensus_4481#1 GGAGCCTTTTTTGAATTTTAGTTNCGAACCGGGCCAGTGAAATGAGTTTCCTGGCCAGGC 292
*********** ****** ******** *************** ****** *
consensus_4481#0 GAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATC 343
consensus_4481#1 TGGGAGGGAAGCCCACTGCTCCG--------GCTTNG--GCTTGCTGCCCGGCCGGAATT 342
**** * ** * ***** ** ** * * *** ** * *** **
consensus_4481#0 ACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAG 403
consensus_4481#1 GGAAGGCCATTGGAAC---------------CCGGTTTCCTTGGGCAGGAACCCCTTGGT 387
* *** * **** *** * * * * *** * ***
consensus_4481#0 CAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAG 463
consensus_4481#1 TT---CCCCCTGGGGCCCCCAAAATT--------------TTTCTCAAAAAACCCNAAAA 430
* *** ** * * * ** ** * ** * * * *
consensus_4481#0 AAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTT 523
consensus_4481#1 AAGTGGGCGCCCCCGGGTGTGNGGGGGGGGGGCACAACAAAAAAAATT-TATCTCCCCGC 489
*** ** * * ** ** ** * * * * *** *
consensus_4481#0 ATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCTGATCGATGGTGTGCGGGAGA 583
consensus_4481#1 GCGGNG----AAAAAAGGAAAACAAAAAAGTGGCTCCNC--------------------- 524
* * ** * * ** ** * ** *
consensus_4481#0 ACAAGCAGCACTGGATCGAGCTGGCCCAAAGCGCGAAGGAGGCGTACGCAAACAACAATA 643
consensus_4481#1 ------------------------------------------------------------
consensus_4481#0 ACACGAGCGAAAACAATAATAACAACAAGAGCCCCTGCACGGACCATGCGGAGGACGACG 703
consensus_4481#1 ------------------------------------------------------------
consensus_4481#0 GCCACCAGCAAGAATGGGGGTGGTGGAGTGCGTCCGCAGCCCGCTCGGATCACCAGCAAG 763
consensus_4481#1 ------------------------------------------------------------
consensus_4481#0 TAGCCACGAGTCNGCCACCACTAACAGTAGTC 795
consensus_4481#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||