cluster # 4485

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Anopheles gambiae
cluster # 4485 cluster # 4485 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4485#0 length = 586 sequences # 1

consensus_4485#1 length = 449 sequences # 1
consensus_4485#2 length = 355 sequences # 1

consensusID : consensus_4485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TAACTAAGATTATCACTGCCGCTACTTACCCAAGAATGACTCTCCTCCCCATCGTCATCCCTTTGCTCGCCGTCCAACCACTTTTACTCTTCCCGCTCGTTCTCCCACTCAGAATGTCAGCTGCCTGGACGAAAAAAGCCTTCACAAAGCCCACTGCAATGAACATGGCACGTCGGCTCGATGTAATANTTTTCGGAGCAAGTGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTTAAGCTGTTGGCCAACATGAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACACGCTGAAAGAGATTGGCGAAAAGGCCAAGACCGACCTGTCGCACGTACCGATCGTGCTGGCGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGTCGGGTGATCGTGAACTGCTGCGGTCCGTATCGATTGTACGGTGAGCCGGTGCTAAAGGCGTGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAAGGCATGCAGCTAAAGTACCACGAGGCAGCGAAGGAGAAAGGCATTTATCTAATATCGGCCTG]

[+] EMBL BX623314             [TAACTAAGATTATCACTGCCGCTACTTACCCAAGAATGACTCTCCTCCCCATCGTCATCCCTTTGCTCGCCGTCCAACCACTTTTACTCTTCCCGCTCGTTCTCCCACTCAGAATGTCAGCTGCCTGGACGAAAAAAGCCTTCACAAAGCCCACTGCAATGAACATGGCACGTCGGCTCGATGTAATANTTTTCGGAGCAAGTGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTTAAGCTGTTGGCCAACATGAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACACGCTGAAAGAGATTGGCGAAAAGGCCAAGACCGACCTGTCGCACGTACCGATCGTGCTGGCGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGTCGGGTGATCGTGAACTGCTGCGGTCCGTATCGATTGTACGGTGAGCCGGTGCTAAAGGCGTGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAAGGCATGCAGCTAAAGTACCACGAGGCAGCGAAGGAGAAAGGCATTTATCTAATATCGGCCTG]




>consensus_4485#0
TAACTAAGATTATCACTGCCGCTACTTACCCAAGAATGACTCTCCTCCCCATCGTCATCC
CTTTGCTCGCCGTCCAACCACTTTTACTCTTCCCGCTCGTTCTCCCACTCAGAATGTCAG
CTGCCTGGACGAAAAAAGCCTTCACAAAGCCCACTGCAATGAACATGGCACGTCGGCTCG
ATGTAATANTTTTCGGAGCAAGTGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTTA
AGCTGTTGGCCAACATGAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACA
CGCTGAAAGAGATTGGCGAAAAGGCCAAGACCGACCTGTCGCACGTACCGATCGTGCTGG
CGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGTCGGGTGATCGTGA
ACTGCTGCGGTCCGTATCGATTGTACGGTGAGCCGGTGCTAAAGGCGTGTCTAGCCGAAC
GGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAAGGCATGCAGCTAAAGT
ACCACGAGGCAGCGAAGGAGAAAGGCATTTATCTAATATCGGCCTG

consensusID : consensus_4485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [GTACCATCGCGTNTTGGGGGTAGAATAAGTAATACAGAACGATTGGGCTTTAGTAAATTAACTAAGCAATGAACATGGCACGTCGACTGGATGTAATAATTTTCGGAGCAAGTGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTGAAGCTGTTGGCCAACATGAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACACACTGAAAGAGATTGGCGAAAAGGCCAAGACCGACCTGTCGCACGTACCGATCGTGCTGGCGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGTCGGGTGATCGTCAACTGCTGCGGTCCGTATCGATTGTACGGTGAGCCGGTGCTAAAGGCATGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAANGCATGCAGCTAAAG]

[+] EMBL BX624236             [GTACCATCGCGTNTTGGGGGTAGAATAAGTAATACAGAACGATTGGGCTTTAGTAAATTAACTAAGCAATGAACATGGCACGTCGACTGGATGTAATAATTTTCGGAGCAAGTGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTGAAGCTGTTGGCCAACATGAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACACACTGAAAGAGATTGGCGAAAAGGCCAAGACCGACCTGTCGCACGTACCGATCGTGCTGGCGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGTCGGGTGATCGTCAACTGCTGCGGTCCGTATCGATTGTACGGTGAGCCGGTGCTAAAGGCATGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAANGCATGCAGCTAAAG]




>consensus_4485#1
GTACCATCGCGTNTTGGGGGTAGAATAAGTAATACAGAACGATTGGGCTTTAGTAAATTA
ACTAAGCAATGAACATGGCACGTCGACTGGATGTAATAATTTTCGGAGCAAGTGGATTTA
CTGGCAAGTATGCCGTGCTCGAAAGCGTGAAGCTGTTGGCCAACATGAAGTGGGGCATTG
CTGGCCGTAGCCAGAACAAGCTGCAAGACACACTGAAAGAGATTGGCGAAAAGGCCAAGA
CCGACCTGTCGCACGTACCGATCGTGCTGGCGGACGTTAACAATCAGGACTCGCTGATCA
ACATGGCACGGGACTGTCGGGTGATCGTCAACTGCTGCGGTCCGTATCGATTGTACGGTG
AGCCGGTGCTAAAGGCATGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGC
CACAGTTCCTCGAANGCATGCAGCTAAAG

consensusID : consensus_4485#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [AGAATCGCCACGAGGTGNACTGGATGTAATAATTTTCGGACCNAAGTGGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTGAAGCTGTTGGCCAACATGAAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACACACTGAAAGAGATTGGGCGAACAAGGCCNAAGACCGACCTGTCGCACGTAACGATACGTGCTGGCAGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGGTCGTGGTGATCGTCAACTGCTGCGGTCCGTATCGAGTTGTACGGTGAGCCGGTGCTAAAGGCCATGTCTAGCCGAACGGACGCACCACGTGGACGGT]

[+] EMBL BX469287             [AGAATCGCCACGAGGTGNACTGGATGTAATAATTTTCGGACCNAAGTGGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCGTGAAGCTGTTGGCCAACATGAAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAAGACACACTGAAAGAGATTGGGCGAACAAGGCCNAAGACCGACCTGTCGCACGTAACGATACGTGCTGGCAGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGGTCGTGGTGATCGTCAACTGCTGCGGTCCGTATCGAGTTGTACGGTGAGCCGGTGCTAAAGGCCATGTCTAGCCGAACGGACGCACCACGTGGACGGT]




>consensus_4485#2
AGAATCGCCACGAGGTGNACTGGATGTAATAATTTTCGGACCNAAGTGGGATTTACTGGC
AAGTATGCCGTGCTCGAAAGCGTGAAGCTGTTGGCCAACATGAAAGTGGGGCATTGCTGG
CCGTAGCCAGAACAAGCTGCAAGACACACTGAAAGAGATTGGGCGAACAAGGCCNAAGAC
CGACCTGTCGCACGTAACGATACGTGCTGGCAGGACGTTAACAATCAGGACTCGCTGATC
AACATGGCACGGGACTGGTCGTGGTGATCGTCAACTGCTGCGGTCCGTATCGAGTTGTAC
GGTGAGCCGGTGCTAAAGGCCATGTCTAGCCGAACGGACGCACCACGTGGACGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4485#1      ------------------------------------------------------------
consensus_4485#2      ------------------------------------------------------------
consensus_4485#0      TAACTAAGATTATCACTGCCGCTACTTACCCAAGAATGACTCTCCTCCCCATCGTCATCC 60
                                                                                  

consensus_4485#1      -----------------------------GTACCATCGCGTNTTGGGGGTAGAATA--AG 29
consensus_4485#2      ------------------------------------------------------------
consensus_4485#0      CTTTGCTCGCCGTCCAACCACTTTTACTCTTCCCGCTCGTTCTCCCACTCAGAATGTCAG 120
                                                                                  

consensus_4485#1      TAATACAGAACGATTGGGCTTTAGTAAATTAACTAAGCAATGAACATGGCACGTCGACTG 89
consensus_4485#2      ------------------------------------AGAATCGCCACG--AGGTGNACTG 22
consensus_4485#0      CTGCCTGGACGAAAAAAGCCTTCACAAAGCC-CACTGCAATGAACATGGCACGTCGGCTC 179
                                                            ***   ** *  * **   ** 

consensus_4485#1      GATGTAATAATTTTCGGAGCAAGT--GGATTTACTGGCAAGTATGCCGTGCTCGAAAGCG 147
consensus_4485#2      GATGTAATAATTTTCGGACCNAAGTGGGATTTACTGGCAAGTATGCCGTGCTCGAAAGCG 82
consensus_4485#0      GATGTAATANTTTTCGGAGCAAGT--GGATTTACTGGCAAGTATGCCGTGCTCGAAAGCG 237
                      ********* ******** * *    **********************************

consensus_4485#1      TGAAGCTGTTGGCCAACATGAA-GTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAA 206
consensus_4485#2      TGAAGCTGTTGGCCAACATGAAAGTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAA 142
consensus_4485#0      TTAAGCTGTTGGCCAACATGAA-GTGGGGCATTGCTGGCCGTAGCCAGAACAAGCTGCAA 296
                      * ******************** *************************************

consensus_4485#1      GACACACTGAAAGAGATTGG-CGAAAAGG--CCAAGACCGACCTGTCGCACGTACCGAT- 262
consensus_4485#2      GACACACTGAAAGAGATTGGGCGAACAAGGCCNAAGACCGACCTGTCGCACGTAACGATA 202
consensus_4485#0      GACACGCTGAAAGAGATTGG-CGAAAAGG--CCAAGACCGACCTGTCGCACGTACCGAT- 352
                      ***** ************** **** * *  * ********************* **** 

consensus_4485#1      CGTGCTGGC-GGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTG-TCG- 319
consensus_4485#2      CGTGCTGGCAGGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTGGTCGT 262
consensus_4485#0      CGTGCTGGC-GGACGTTAACAATCAGGACTCGCTGATCAACATGGCACGGGACTG-TCG- 409
                      ********* ********************************************* *** 

consensus_4485#1      GGTGATCGTCAACTGCTGCGGTCCGTATCGA-TTGTACGGTGAGCCGGTGCTAAAGGC-A 377
consensus_4485#2      GGTGATCGTCAACTGCTGCGGTCCGTATCGAGTTGTACGGTGAGCCGGTGCTAAAGGCCA 322
consensus_4485#0      GGTGATCGTGAACTGCTGCGGTCCGTATCGA-TTGTACGGTGAGCCGGTGCTAAAGGC-G 467
                      ********* ********************* **************************  

consensus_4485#1      TGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAANGC 437
consensus_4485#2      TGTCTAGCCGAACGGACGCACCACGTGGACGGT--------------------------- 355
consensus_4485#0      TGTCTAGCCGAACGGACGCACCACGTGGACGTGAGCGGGGAGCCACAGTTCCTCGAAGGC 527
                      *******************************                             

consensus_4485#1      ATGCAGCTAAAG----------------------------------------------- 449
consensus_4485#2      -----------------------------------------------------------
consensus_4485#0      ATGCAGCTAAAGTACCACGAGGCAGCGAAGGAGAAAGGCATTTATCTAATATCGGCCTG 586