Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4498 cluster # 4498       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4498#0 length = 686 sequences # 2  
consensus_4498#1 length = 491 sequences # 1  

consensusID : consensus_4498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 686
fasta sequence
                              [CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGG------TGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTATGAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCCTCGAAAGGGATATCCT]

[+] EMBL BM579436             [CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGG      TGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTATGAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCC                ]
[+] EMBL BM595938             [                                                   ccgGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTTGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTTACATTGTTTCCGATAAGAAGCGGGATCTGGACCACAGTGAAATAACGAGCGAATATCTGATGGACTGTGAAACAACGACAAGCCTAGTGGATGGTGCTGCTGACAAACTTTGCTCGGTTCTAGTGTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCATCGAAAGGGATATCCT]


>consensus_4498#0 CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTG TGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACA ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG TTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTT CACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAA ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTGTT TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTAT GAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGT GAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTC GAAACACCCCTCGAAAGGGATATCCT



consensusID : consensus_4498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence
                              [GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAACCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGTGAAAC]

[+] EMBL BX604786             [GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAACCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGTGAAAC]


>consensus_4498#1 GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAA CCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGT GGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAG ATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTA GATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACG TCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGAT CAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAAC GGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATG GACTGTGAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4498#0      CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTG 60
consensus_4498#1      --------------GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTG 46
                                    ************ ****** ** ***********************

consensus_4498#0      TGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACA 120
consensus_4498#1      TGCGTGCCAAATAAC----------------------------------------CAACA 66
                      **************                                         *****

consensus_4498#0      ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC 180
consensus_4498#1      ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC 126
                      ************************************************************

consensus_4498#0      TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG 240
consensus_4498#1      TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG 186
                      ************************************************************

consensus_4498#0      TTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTT 300
consensus_4498#1      TTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTT 246
                      ************************** *********************************

consensus_4498#0      CACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAA 360
consensus_4498#1      CACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAA 306
                      ************* ***************************** ****************

consensus_4498#0      ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT 420
consensus_4498#1      ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT 366
                      ************************************************************

consensus_4498#0      ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTGTT 480
consensus_4498#1      ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTT 426
                      ********************************** *************************

consensus_4498#0      TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTAT 540
consensus_4498#1      TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGT 486
                      ************************************************** ******* *

consensus_4498#0      GAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGT 600
consensus_4498#1      GAAAC------------------------------------------------------- 491
                      *****                                                       

consensus_4498#0      GAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTC 660
consensus_4498#1      ------------------------------------------------------------
                                                                                  

consensus_4498#0      GAAACACCCCTCGAAAGGGATATCCT 686
consensus_4498#1      --------------------------
                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)