cluster # 4500

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Anopheles gambiae
cluster # 4500 cluster # 4500 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4500#0 length = 1017 sequences # 2

consensus_4500#1 length = 489 sequences # 1

consensusID : consensus_4500#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1017
fasta sequence

                              [CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCTTTCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTTTTTTTTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGAATAACGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCCGAGGTGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCATACGCGTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTGCGTGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTGGAAATAACGCCCAACTATTCGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGACACGCGCGTCTGGATGGTGAAGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATGGCGGTCATCTTTGGCGGCCAGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGGCTGCTAGCAATATGGAACACACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACAGCGCCCGAGCTGGTACACGTACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCTAGCTTTATTGAACACGACCGTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAGCTGCCGGAACTGGGCGACACGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTGCACTGGTACCACCACA]

[+] EMBL BM634965             [CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCTTTCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTTTTTTTTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGAATAACGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCCGAGGTGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCATACGCGTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTGCGTGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM645334             [                                                                                                                                                                                                                                                                                                                                                                                  cCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTCTGTGCGTGAGTGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTGGAAATAACGCCCAACTATTCGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGACACGCGCGTCTGGATGGTGAAGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATGGCGGTCATCTTTGGCGGCCAGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGGCTGCTAGCAATATGGAACACACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACAGCGCCCGAGCTGGTACACGTACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCTAGCTTTATTGAACACGACCGTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAGCTGCCGGAACTGGGCGACACGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTGCACTGGTACCACCACA]




>consensus_4500#0
CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCTT
TCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTTTTTT
TTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGAATAA
CGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCCGAGG
TGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAATCATT
AGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCATACGC
GTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAG
TGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAAC
CGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTGCGTGTGTGTGTGTGTAT
CCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTGGAAATAACGCCCAACTATT
CGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGACACGCGCGTCTGGATGGTGA
AGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATGGCGGTCATCTTTGGCGGCC
AGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGGCTGCTAGCAATATGGAACA
CACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACAGCGCCCGAGCTGGTACACG
TACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCTAGCTTTATTGAACACGACC
GTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAGCTGCCGGAACTGGGCGACA
CGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTGCACTGGTACCACCACA

consensusID : consensus_4500#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACACACCACCCGGAATAAAAAGTCGGTTTTAATCCGAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCTAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCCTCCCCACACACATACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACAAGTGTCTGTGTGTGTGTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTGCAGTGACTGTGTCGGTGTAAGTGTGTGCGTGCGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATG]

[+] EMBL BM589955             [CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACACACCACCCGGAATAAAAAGTCGGTTTTAATCCGAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCTAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCCTCCCCACACACATACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACAAGTGTCTGTGTGTGTGTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTGCAGTGACTGTGTCGGTGTAAGTGTGTGCGTGCGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATG]




>consensus_4500#1
CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTT
TCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACACACCACCCGGAATAA
AAAGTCGGTTTTAATCCGAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGT
GTCGCTAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAA
CCCTCCCCACACACATACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGAC
AAGTGTCTGTGTGTGTGTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCG
CAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTGCAGTGACTGTGTCGGT
GTAAGTGTGTGCGTGCGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGC
CTCAAGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4500#0      ----CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTT 56
consensus_4500#1      CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTT 60
                           * *****************************************************

consensus_4500#0      TCTTTCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTT 116
consensus_4500#1      TCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACAC-------------- 106
                      ** *************** ***** *********************              

consensus_4500#0      TTTTTTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGA 176
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      ATAACGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCC 236
consensus_4500#1      --------------------------ACCACCCG---GAATAAAAAGTCGGTTTTAATCC 137
                                                ***   **   ***********************

consensus_4500#0      GAGGTGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAAT 296
consensus_4500#1      GAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCTAAACGTCTAAT 197
                      ******  **************************************** ***********

consensus_4500#0      CATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCAT 356
consensus_4500#1      CATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACC-CTCCCCACACACAT 256
                      ********************************************* * ******** ***

consensus_4500#0      ACGCGTT-GGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGT 415
consensus_4500#1      ACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACAAGTGTCTGTGTGTGT 316
                      ******* ************************************ ****** ********

consensus_4500#0      G------------GAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCC 463
consensus_4500#1      GTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCC 376
                      *            ***********************************************

consensus_4500#0      GGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTG 523
consensus_4500#1      GGCAAAACGGGAAGAACCGCGTGTTGT-GCAGTGACTGTGTCGGTGTAAGTGTGTGCGTG 435
                      *************************** ************************ *******

consensus_4500#0      CGTG--TGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTG 581
consensus_4500#1      CGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATG------ 489
                      ****  ************************************************      

consensus_4500#0      GAAATAACGCCCAACTATTCGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGAC 641
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      ACGCGCGTCTGGATGGTGAAGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATG 701
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      GCGGTCATCTTTGGCGGCCAGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGG 761
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      CTGCTAGCAATATGGAACACACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACA 821
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      GCGCCCGAGCTGGTACACGTACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCT 881
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      AGCTTTATTGAACACGACCGTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAG 941
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      CTGCCGGAACTGGGCGACACGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTG 1001
consensus_4500#1      ------------------------------------------------------------
                                                                                  

consensus_4500#0      CACTGGTACCACCACA 1017
consensus_4500#1      ----------------