These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence [CCGCCCACGCGTCCGGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAAAAACGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGCAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGATTCGTGTGCCGATCGGAACAATATACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGCGCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCATCGGAAGAACTAAAAATAATTCTTTAAACGCCGGCGGCACAACCAGGAATAGAACTTGTGTGTTTTCTTTTTTCCCTTCATCGCCCGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCAAAGTGAGTGTGTGTGTGTGTTGGAGCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAAACACAGCGCTGCCAACGATTACACACGCCAAGCAACCACCACTACACAAGCAGCAAAGGATCACACGCATACAAACGCAGCACACACACTCGTCGGTGCACACAAAGGAAAACCCCCGCACGGTCAGCAGCTGTCGTCGCTTCGTTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTGCGCGTGTGTGGCAAAAGAATAAAGGATTAAAGCCACACCACACCAACCACCGCTTTTGTTTATTGTGCGCGTGTGT] [+] EMBL BM586730 [CCGCCCACGCGTCCGGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAAAAACGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGCAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGATTCGTGTGCCGATCGGAACAATATACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGC ] [+] EMBL BM644483 [ ccgGCGACGAAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGCGCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCATCGGAAGAACTAAAAATAATTCTTTAAACGCCGGCGGCACAACCAGGAATAGAACTTGTGTGTTTTCTTTTTTCCCTTCATCGCCCGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCAAAGTGAGTGTGTGTGTGTGTTGGAGCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAAACACAGCGCTGCCAACGATTACACACGCCAAGCAACCACCACTACACAAGCAGCAAAGGATCACACGCATACAAACGCAGCACACACACTCGTCGGTGCACACAAAGGAAAACCCCCGCACGGTCAGCAGCTGTCGTCGCTTCGTTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTGCGCGTGTGTGGCAAAAGAATAAAGGATTAAAGCCACACCACACCAACCACCGCTTTTGTTTATTGTGCGCGTGTGT] consensusID : consensus_4501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACCCCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACGGGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAATCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAAAGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAAGTGT] [+] EMBL BM643899 [CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACCCCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACGGGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAATCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAAAGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4501#0 ------------------------------------------------------------ consensus_4501#1 CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACC 60 consensus_4501#0 ------------------------------------------------------------ consensus_4501#1 CCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACG 120 consensus_4501#0 ------------------------------------------------------------ consensus_4501#1 GGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAA 180 consensus_4501#0 -----------------------CCGCCC-ACGCGTCCGGCCGTGGGACAATCGCTCGCC 36 consensus_4501#1 TCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCC 240 * * * * * ********************* consensus_4501#0 TGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAA 96 consensus_4501#1 TGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAA 300 ****************************************************** ***** consensus_4501#0 AAACGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCT 156 consensus_4501#1 A---GCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCT 357 * ********************************* ********************** consensus_4501#0 CGACGAGCAGAGGCAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTA 216 consensus_4501#1 CGACGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTA 417 ************* ********************************************** consensus_4501#0 GCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTC 276 consensus_4501#1 GCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTC 477 ************************************************************ consensus_4501#0 GCTATTTTGATACGCCACAAGCGGATGATTCGTGTGCCGATCGGAACAATATACGGTATG 336 consensus_4501#1 GCTATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATG 537 *************************** ******** ************* ******** consensus_4501#0 CGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACG 396 consensus_4501#1 CGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACG 597 ************************************************************ consensus_4501#0 TACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACG 456 consensus_4501#1 TACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACG 657 ************************************************************ consensus_4501#0 AAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAA 516 consensus_4501#1 AAACGGAAAA-GTGT--------------------------------------------- 671 ********* **** consensus_4501#0 TAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCA 576 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 TTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACC 636 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 ATCTAGAACGAATCCGGAGGAAGCGCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCAT 696 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 CGGAAGAACTAAAAATAATTCTTTAAACGCCGGCGGCACAACCAGGAATAGAACTTGTGT 756 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 GTTTTCTTTTTTCCCTTCATCGCCCGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCA 816 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 AAGTGAGTGTGTGTGTGTGTTGGAGCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAA 876 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 ACACAGCGCTGCCAACGATTACACACGCCAAGCAACCACCACTACACAAGCAGCAAAGGA 936 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 TCACACGCATACAAACGCAGCACACACACTCGTCGGTGCACACAAAGGAAAACCCCCGCA 996 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 CGGTCAGCAGCTGTCGTCGCTTCGTTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTG 1056 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 CGCGTGTGTGGCAAAAGAATAAAGGATTAAAGCCACACCACACCAACCACCGCTTTTGTT 1116 consensus_4501#1 ------------------------------------------------------------ consensus_4501#0 TATTGTGCGCGTGTGT 1132 consensus_4501#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||