These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CCGCGGACGCGTGGGTGCGGCGCCGCTGCTGGCTTTCCAGTGGGCCTTTCGGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCGTCCGGGGTGAACTACGCGCCTCGCCATTCCGGAGCGTTTGCTGGGCCATATTTCTCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTCCGATGCACGGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCAGACCACCGACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA] [+] EMBL BM602739 [CCGCGGACGCGTGGGTGCGGCGCCGCTGCTGGCTTTCCAGTGGGCCTTTCGGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCGTCCGGGGTGAACTACGCGCCTCGCCATTCCGGAGCGTTTGCTGGGCCATATTTCTCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTCCGATGCACGGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCAGACCACCGACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA] consensusID : consensus_4503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 601 fasta sequence [CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGTTTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTTC] [+] EMBL BM576233 [CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGTTTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTTC] [+] EMBL BM625898 [ ccgCTGGCGGTGTTTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGAACGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTCGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAA CAACAAC GACGCTGTCCCAAACTGCGGTCAATCGAATCGAGCCGAGCGATAGGTTTGAACTTTCCGAAAGG CACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCG CCGTCCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4503#0 -------------------------------------------CCGCGGACGCGTGGG-- 15 consensus_4503#1 CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGT 60 ****** * ** consensus_4503#0 -TGCGGCGCCGCTGCT----GGCTTTCCAGTGGGCCTTTCGGATCGTGTCACATTCGATT 70 consensus_4503#1 TTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATT 120 * *** **** * * * **** * ** * ******************* consensus_4503#0 TGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATG 130 consensus_4503#1 TGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATG 180 ************************************************************ consensus_4503#0 CTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGG 190 consensus_4503#1 CTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGG 240 ************************************************************ consensus_4503#0 TGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAA 250 consensus_4503#1 TGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAA 300 ************************************************************ consensus_4503#0 ACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAA 310 consensus_4503#1 ACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAA 360 ************************************************************ consensus_4503#0 AGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAA 370 consensus_4503#1 AGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAA 420 ************************************************************ consensus_4503#0 GCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTA 430 consensus_4503#1 GCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTA 480 ************************************************************ consensus_4503#0 GAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTC 490 consensus_4503#1 GAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTC 540 ************************************************************ consensus_4503#0 GCC-GTCCGGGGTGAACTACGCGCCTCGCCATT-CCGGAGCGTTTGCTGGGCCATATTTC 548 consensus_4503#1 GCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTT 600 *** ***************************** ********************** ** consensus_4503#0 TCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTCCGATGCAC 608 consensus_4503#1 C----------------------------------------------------------- 601 consensus_4503#0 GGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCAGACCACCG 668 consensus_4503#1 ------------------------------------------------------------ consensus_4503#0 ACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA 703 consensus_4503#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||