These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [CAGAATCNCGCACGAGGTGAAGTGTGAGGATTTCACAGAACTGGCAAGTACATAGCGGTCGCCCTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGTA-CCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAACAGGTACGAAGAGGAAAGGCGGAAAAGGACCGGTTGCCT-CGCTAATG-TTGCTTACTCGG-CA-CAACACGGACGANTTTCCCCTGGCTTTGACCGGTACCTGGTCGGCCATTCCGGGGCCAAGNTGATCCTTCNGANGAAGTTCGGCNCCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTTTTGACACCTGGTCCNAAAAGGGGTTCCGAAAGTGTCCACCGAAACGGAAGGATCNAACGGAGC] [+] EMBL BX467446 [CAGAATCNCGCACGAGGTGAAGTGTGAGGATTTCACAGAACTGGCAAGTACATAGCGGTCGCCCTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGTA CCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAACAGGTACGAAGAGGAAAGGCGGAAAAGGACCGGTTGCCT CGCTAATG TTGCTTACTCGG CA CAACACGGACGANTTTCCCCTGGCTTTGACCGGTACCTGGTCGGCCATTCCGGGGCCAAGNTGATCCTTCNGANGAAGTTCGGCNCCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTTTTGACACCTGGTCCNAAAAGGGGTTCCGAAAGTGT ] [+] EMBL BX622005 [ CTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGTACCCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGA GGTAAGCAAACA GTACGAAGAGG AAGGCGGAAAAGTACC GCTGCCTCCGCTAATGTTTGCTTACTCGGCCACCAACACGGACGA TTT CCT GC TGACC GTA CT GTCGCGCATTC GGG CAAG TGATC TC GAAG AG TC GCTCC TGCT AC TG CCGTTTAAT G CGGTG TGTGA A CTGCTC GAAA GGGTTCCGAAGCTGACCACCGAAACGGAAGGATCNAACGGAGC] consensusID : consensus_4504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCCAAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTGAGGATTTCCCAGAATGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG] [+] EMBL BX626523 [ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCCAAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTGAGGATTTCCCAGAATGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4504#0 ------------------------------------------------------------ consensus_4504#1 ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCC 60 consensus_4504#0 --------------------------------CAGAATCNCGCACGAGGTG--AAGTGTG 26 consensus_4504#1 AAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTG 120 ** * * * **** ****** consensus_4504#0 AGGATTTCACAGAACTGGCAAGTACATAGCGGTCGCCCTGCTTGACACGACGGTGAAAAT 86 consensus_4504#1 AGGATTTCCCAGAA-TGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAAT 179 ******** ***** ****************************** ************** consensus_4504#0 ATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGT 146 consensus_4504#1 ATTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGT 239 ********************** ******************* ***************** consensus_4504#0 AACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGAT 206 consensus_4504#1 AACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGAT 299 ************************************************************ consensus_4504#0 AAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACAC 266 consensus_4504#1 AAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACAC 359 ************************************************************ consensus_4504#0 CGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGG 326 consensus_4504#1 CGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGG 419 ************************************************************ consensus_4504#0 CAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTT 386 consensus_4504#1 CAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTT 479 ************************************************************ consensus_4504#0 GGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTC 446 consensus_4504#1 GGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG----------------------- 516 ************************************* consensus_4504#0 AGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCA 506 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 AGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGT 566 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 ACCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCG 626 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 GAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAACAGGTACGAAGAGGAAAGGCGGAAAA 686 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 GGACCGGTTGCCTCGCTAATGTTGCTTACTCGGCACAACACGGACGANTTTCCCCTGGCT 746 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 TTGACCGGTACCTGGTCGGCCATTCCGGGGCCAAGNTGATCCTTCNGANGAAGTTCGGCN 806 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 CCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTTTTGACACCTGGTCCNAAAAGGGGTTC 866 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 CGAAAGTGTCCACCGAAACGGAAGGATCNAACGGAGC 903 consensus_4504#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||