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Anopheles gambiae
cluster # 4504 cluster # 4504       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4504#0 length = 903 sequences # 2  
consensus_4504#1 length = 516 sequences # 1  

consensusID : consensus_4504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 903
fasta sequence
                              [CAGAATCNCGCACGAGGTGAAGTGTGAGGATTTCACAGAACTGGCAAGTACATAGCGGTCGCCCTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGTA-CCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAACAGGTACGAAGAGGAAAGGCGGAAAAGGACCGGTTGCCT-CGCTAATG-TTGCTTACTCGG-CA-CAACACGGACGANTTTCCCCTGGCTTTGACCGGTACCTGGTCGGCCATTCCGGGGCCAAGNTGATCCTTCNGANGAAGTTCGGCNCCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTTTTGACACCTGGTCCNAAAAGGGGTTCCGAAAGTGTCCACCGAAACGGAAGGATCNAACGGAGC]

[+] EMBL BX467446             [CAGAATCNCGCACGAGGTGAAGTGTGAGGATTTCACAGAACTGGCAAGTACATAGCGGTCGCCCTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGTA CCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAACAGGTACGAAGAGGAAAGGCGGAAAAGGACCGGTTGCCT CGCTAATG TTGCTTACTCGG CA CAACACGGACGANTTTCCCCTGGCTTTGACCGGTACCTGGTCGGCCATTCCGGGGCCAAGNTGATCCTTCNGANGAAGTTCGGCNCCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTTTTGACACCTGGTCCNAAAAGGGGTTCCGAAAGTGT                            ]
[+] EMBL BX622005             [                                                               CTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGTACCCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGA GGTAAGCAAACA GTACGAAGAGG AAGGCGGAAAAGTACC GCTGCCTCCGCTAATGTTTGCTTACTCGGCCACCAACACGGACGA TTT  CCT GC  TGACC GTA CT GTCGCGCATTC  GGG CAAG TGATC  TC GAAG AG TC GCTCC  TGCT AC TG CCGTTTAAT G CGGTG TGTGA A CTGCTC  GAAA GGGTTCCGAAGCTGACCACCGAAACGGAAGGATCNAACGGAGC]


>consensus_4504#0 CAGAATCNCGCACGAGGTGAAGTGTGAGGATTTCACAGAACTGGCAAGTACATAGCGGTC GCCCTGCTTGACACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGTTTTATCTTTCT CTGTACGGCCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATC ATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCAT CGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCAC ATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAG AAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAAT GGGAAGTACGTCGTTAGTTGCGGTTCAGACCGTACTCTACGGCTGTTCCATCGCACCGAG GAACCGCTTGTTCTGCAGGACGTGCAAGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACG CTGGCCACAGGAGAAGAATCGACCGTACCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGA AAACAATCGGATCGGAGAAGGGAGCGGAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAA CAGGTACGAAGAGGAAAGGCGGAAAAGGACCGGTTGCCTCGCTAATGTTGCTTACTCGGC ACAACACGGACGANTTTCCCCTGGCTTTGACCGGTACCTGGTCGGCCATTCCGGGGCCAA GNTGATCCTTCNGANGAAGTTCGGCNCCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTT TTGACACCTGGTCCNAAAAGGGGTTCCGAAAGTGTCCACCGAAACGGAAGGATCNAACGG AGC



consensusID : consensus_4504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence
                              [ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCCAAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTGAGGATTTCCCAGAATGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG]

[+] EMBL BX626523             [ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCCAAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTGAGGATTTCCCAGAATGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAATATTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGTAACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATAAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACCGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGCAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTGGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG]


>consensus_4504#1 ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCC AAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTG AGGATTTCCCAGAATGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAATA TTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGTA ACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGATA AAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACACC GTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGGC AAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTTG GGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4504#0      ------------------------------------------------------------
consensus_4504#1      ACGACCGTAAAGTTTTGGTCCTTTGAACTGATCGCTGCAAGCGGTGGCCAGGACGCGGCC 60
                                                                                  

consensus_4504#0      --------------------------------CAGAATCNCGCACGAGGTG--AAGTGTG 26
consensus_4504#1      AAGGTGCTCTCGCTGTTGCACAAAAACACTCTCAAGCTGGAGGAAACGGTGTTGAGTGTG 120
                                                      **   *   * *   ****   ******

consensus_4504#0      AGGATTTCACAGAACTGGCAAGTACATAGCGGTCGCCCTGCTTGACACGACGGTGAAAAT 86
consensus_4504#1      AGGATTTCCCAGAA-TGGCAAGTACATAGCGGTCGCCCTGCTTGATACGACGGTGAAAAT 179
                      ******** ***** ****************************** **************

consensus_4504#0      ATTCTTCATGGACAGTCTCAAGTTTTATCTTTCTCTGTACGGCCATAAGCTGCCCGTAGT 146
consensus_4504#1      ATTCTTCATGGACAGTCTCAAGNTTTATCTTTCTCTGTACGGNCATAAGCTGCCCGTAGT 239
                      ********************** ******************* *****************

consensus_4504#0      AACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGAT 206
consensus_4504#1      AACGATGGACATCTCGTACGATTCGACTCTCATCATAACGGGGTCGGCCGATCGTACGAT 299
                      ************************************************************

consensus_4504#0      AAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACAC 266
consensus_4504#1      AAAGATTTGGGGCATGGACTTTGGCGATTGCCATCGCTCGCTGCTTGCGCATGATAACAC 359
                      ************************************************************

consensus_4504#0      CGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGG 326
consensus_4504#1      CGTGACGGCGGTTCAGTTCATCCCGAACACGCACATGTTCTTCTCTTGCGCCAAGGACGG 419
                      ************************************************************

consensus_4504#0      CAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTT 386
consensus_4504#1      CAAACTGAAGCAGTGGGATGCGGACAGCTTTCAGAAGATTATCACGTTGCCCGGCCATTT 479
                      ************************************************************

consensus_4504#0      GGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGGAAGTACGTCGTTAGTTGCGGTTC 446
consensus_4504#1      GGGAGAAGCGCACGCGCTTGCGATTAGCCCCAATGGG----------------------- 516
                      *************************************                       

consensus_4504#0      AGACCGTACTCTACGGCTGTTCCATCGCACCGAGGAACCGCTTGTTCTGCAGGACGTGCA 506
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      AGAGGAAGAGCGAGAGGAGCTAGAGAATGCTACGCTGGCCACAGGAGAAGAATCGACCGT 566
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      ACCGGTTTGCCTGGTCTGAAACTGCCGTCCAAGAAAACAATCGGATCGGAGAAGGGAGCG 626
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      GAAAACATTCTCGAGTGTCTCGAGGGTAAGCAAACAGGTACGAAGAGGAAAGGCGGAAAA 686
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      GGACCGGTTGCCTCGCTAATGTTGCTTACTCGGCACAACACGGACGANTTTCCCCTGGCT 746
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      TTGACCGGTACCTGGTCGGCCATTCCGGGGCCAAGNTGATCCTTCNGANGAAGTTCGGCN 806
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      CCCNGGGTAACTTGNCCGTTAAATNGCCGGTGTTTTGACACCTGGTCCNAAAAGGGGTTC 866
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      CGAAAGTGTCCACCGAAACGGAAGGATCNAACGGAGC 903
consensus_4504#1      -------------------------------------
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)