cluster # 4506

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Anopheles gambiae
cluster # 4506 cluster # 4506 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4506#0 length = 573 sequences # 1

consensus_4506#1 length = 493 sequences # 1
consensus_4506#2 length = 396 sequences # 1

consensusID : consensus_4506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGAAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATA]

[+] EMBL BM639312             [CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGAAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATA]




>consensus_4506#0
CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACAT
TAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGAC
AAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAA
ACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGG
AAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACAG
TGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGA
AGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAA
AAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACA
CAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAA
AAAAGGTATAGATAATAATGAACAGAGAATATA

consensusID : consensus_4506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGAAATAATCGAATAAATGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGATGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGACAAAAAAGGTATAGATAATAA]

[+] EMBL BM575012             [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGAAATAATCGAATAAATGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGATGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGACAAAAAAGGTATAGATAATAA]




>consensus_4506#1
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGAAATAATCGAATAAATGACAAACA
AAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGC
AAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGATGTG
TTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACAGTGTGC
TGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAA
AAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAA
GGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGACACAGAGT
AAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGACAAAAAAG
GTATAGATAATAA

consensusID : consensus_4506#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAAAACAAAAAAAATATATATATATATACATACACACATATATACATAGCTTTGAAAATTGTAAAAAAAACACACACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATATAATTAATGATTAATAAAGACAATT]

[+] EMBL BM604909             [CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAAAACAAAAAAAATATATATATATATACATACACACATATATACATAGCTTTGAAAATTGTAAAAAAAACACACACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATATAATTAATGATTAATAAAGACAATT]




>consensus_4506#2
CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAAAACAAAAAAAATATATATATAT
ATACATACACACATATATACATAGCTTTGAAAATTGTAAAAAAAACACACACATACACAC
AAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGA
GAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGG
AAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAA
AGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAA
CAGAGAATATATAATTAATGATTAATAAAGACAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4506#0      CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACAT 60
consensus_4506#1      ------------------------------------------------------------
consensus_4506#2      ------------------------------------------------------------
                                                                                  

consensus_4506#0      TAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGAC 120
consensus_4506#1      --CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGA---AATAATCGAATAAATGAC 55
consensus_4506#2      ------------------------------------------------------------
                                                                                  

consensus_4506#0      AAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGA-AAAACAA 179
consensus_4506#1      AAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGA-AAAACAA 114
consensus_4506#2      ----------------------CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAA 38
                                            **  ** ***  *   ** * *** *   * ***  **

consensus_4506#0      AACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTG 239
consensus_4506#1      AACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTG 174
consensus_4506#2      AACAAAAAAAATATATATATA---------TATACATACACACATATATACATAGCTTTG 89
                      ***   *** * ** **  *          ***  ****  *   * **   * * * **

consensus_4506#0      GAAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACA 299
consensus_4506#1      GATGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACA 234
consensus_4506#2      AAAAT-----TGT-----AAAAAAAACACACAC------------------ATACACACA 121
                       *  *     ***     * * * *** * *                    ** *  ***

consensus_4506#0      GTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAG 359
consensus_4506#1      GTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAG 294
consensus_4506#2      --------------AGACGAAGAAAAGAACTAA-----AAAGCAAACCACATTAACAAGG 162
                                    *** ***** ** **  **     ****  *** * ** *  *  *

consensus_4506#0      AAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGA 419
consensus_4506#1      AAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGA 354
consensus_4506#2      A--CAAACGAAAGTAAAC--GAGAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGA 218
                      *  **** ****  ****  ** ************ ************************

consensus_4506#0      AAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGAC 479
consensus_4506#1      AAAAAA-GGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGAC 413
consensus_4506#2      AAAAAA-GGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGAC 277
                      ****** ************************** **************************

consensus_4506#0      ACAGAGTAAGGAAAGGTGGAAAAA-GCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGAC 538
consensus_4506#1      ACAGAGTAAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGAC 473
consensus_4506#2      ACAGAGTAAGGAAAGGTGGAAAAA-GCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGAC 336
                      ****************** ***** ********************** ************

consensus_4506#0      AAAAAAGGTATAGATAATAATGAACAGAGAATATA------------------------- 573
consensus_4506#1      AAAAAAGGTATAGATAATAA---------------------------------------- 493
consensus_4506#2      AAAAAAGGTATAGATAATAATGAACAGAGAATATATAATTAATGATTAATAAAGACAATT 396
                      ********************