These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 859 fasta sequence [CCGCGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTGCTCGACCCGAGGACACTGCAGGCTGTG-AAAAGATTGCATCACGCTACAGCGGCTGCGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAATGCTGATGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCGTACGGTTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGACGGTTTCCAGCAGAACAAGTACTC] [+] EMBL BM639524 [CCGCGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTGCTCGACCCGAGGACACTGCAGGCTGTG AAAAGATTGCATCACGCTACAGCGGCTGCGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTT ] [+] EMBL BM632907 [ ccgGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTGCTCGACCCGAGGACACTGCAGGCTGTGAAAAAGATTGCATCACGCTACAGCGGCTGCGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAATGCTGATGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCGTACGGTTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGACGGTTTCCAGCAGAACAAGTACTC] consensusID : consensus_4515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGCAGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGGCCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATA] [+] EMBL BM576273 [CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGCAGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGGCCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4515#0 ------------------------------------------------------------ consensus_4515#1 CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGC 60 consensus_4515#0 -------------------------------------CCGCGACGTGAACATGCGGCGGG 23 consensus_4515#1 AGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGG 120 ******************** consensus_4515#0 TGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCA 83 consensus_4515#1 TGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCA 180 ************************************************************ consensus_4515#0 TACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGAC----------------- 126 consensus_4515#1 TACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGG 240 ******************************************* consensus_4515#0 -----ATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGC 181 consensus_4515#1 CCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGC 300 ******************************************************* consensus_4515#0 ACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGC 241 consensus_4515#1 ACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGC 360 ************************************************************ consensus_4515#0 GCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGA 301 consensus_4515#1 GCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGA 420 ************************************************* ********** consensus_4515#0 AGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAG------GACGTTCCGAGCT 355 consensus_4515#1 AGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCT 480 ***************************************** ************* consensus_4515#0 ATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCA 415 consensus_4515#1 ATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCA 540 **************************************** ******************* consensus_4515#0 TCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATC 475 consensus_4515#1 TCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATC 600 ************************************************************ consensus_4515#0 TGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGA 535 consensus_4515#1 TGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGA 660 ************************************************************ consensus_4515#0 ACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGT 595 consensus_4515#1 ACGTGTGCATA------------------------------------------------- 671 *********** consensus_4515#0 TGCTGCTCGACCCGAGGACACTGCAGGCTGTGAAAAGATTGCATCACGCTACAGCGGCTG 655 consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 CGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAAT 715 consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 GCTGATGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCG 775 consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 TACGGTTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGA 835 consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 CGGTTTCCAGCAGAACAAGTACTC 859 consensus_4515#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||