These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCCCGGTGCACGGGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGTAAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGGTTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAAAGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAGTGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCGGCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCGATTGGTTGTGGAAGATGCACGTCGGGGCATCG-TTACGCTGGAAGAAATGGACCCAAACACGAAAGCGTACTGGCGAAAGCTAAGGCGAATGG-GCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTTTCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAGCTGTACATTGAAAATAAAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG] [-] EMBL CNS08K0D [CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCCCGGTGCACGGGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGTAAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGGTTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAAAGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAGTGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCGGCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCGATTGGTTGTGGAAGATGCACGTCGGGGCATCG TTACGCTGGAAGAAATGGACCCAAACACGAAAGCGTACTGGCGAAAGCTAAGGCGAATGG GCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTTTCATAGAAGATAGCACGAAAG ] [+] EMBL CNS08K0C [ GGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGTAAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGGTTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAAAGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAGTGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCGGCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCGATTGGTTGTGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAATGGACCCAAACACGAAAGCGTACTGGCGAAAGCTAAGGCGAATGGCGCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTTTCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAGCTGTACATTGAAAATAAAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG] consensusID : consensus_4516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [CGCCCGAGGTTTACTGGTGACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTTATAGTTTAACGGTCGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAGCTCCCTCATCGGGAGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACCGTAGCGCGAACTTATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATACAAGAAACAAGCTCGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGGGTCGAAACCGATACTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTACTGTAAACAGGGGGAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGTAGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAAGCGTACTGGCGACAAGCTAAGGCGAATGTGCGCTGCANGCGCAAC] [+] EMBL AL933168 [CGCCCGAGGTTTACTGGTGACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTTATAGTTTAACGGTCGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAGCTCCCTCATCGGGAGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACCGTAGCGCGAACTTATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATACAAGAAACAAGCTCGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGGGTCGAAACCGATACTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTACTGTAAACAGGGGGAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGTAGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAAGCGTACTGGCGACAAGCTAAGGCGAATGTGCGCTGCANGCGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4516#0 CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCC 60 consensus_4516#1 ----------------------------------------------CGCCCGAGGTTTAC 14 * * * consensus_4516#0 CGGTGCACGGGAAACAC---GTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTA 117 consensus_4516#1 TGGTG-ACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTTATAGTTTAACGGT 73 **** *********** *** ** *** *********** ************* consensus_4516#0 CGT-AAATAGTTT-TCTAACTACG-CAAACTCTTAAACAAA-ATGAGCTCCCTCATCGGC 173 consensus_4516#1 CGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAGCTCCCTCATCGGG 133 ** ********* ******* * ******** ***** * ***************** consensus_4516#0 AGTTT--GGTTCCAC-TGTTTCGACGCAG-CTTTCTACAGC-TGACCGTAGCACGAACTT 228 consensus_4516#1 AGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACCGTAGCGCGAACTT 193 *** * ****** * ** ********* *********** ********** ******* consensus_4516#0 ATGCAACA-CCAAAGGCCG-GAGGTGCTCTC--GGTGGGTCGAAA---AAGAAA-AAGCT 280 consensus_4516#1 ATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATACAAGAAACAAGCT 253 ******** ********** * ********* * ****** * * ****** ***** consensus_4516#0 CGGCAAG-CTCG-GGCCGGTAG-TGGAGAA--GAAGGTC-ATTCCGG-TCGAAACCGATA 333 consensus_4516#1 CGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGGGTCGAAACCGATA 313 ******* **** ********* ***** * ******* ** **** ************ consensus_4516#0 C-GAACCG-ACTGG-TAAATT-ACGTGT---GCGGCAGCA-ACAT-ACTG-AAACAGGGT 383 consensus_4516#1 CTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTACTGTAAACAGGGG 373 * ****** ***** ****** ****** * * ***** **** **** ******** consensus_4516#0 GAGGATATCAAACTGCAGC-CCGACTCGGAGTATCCCGATTGGTTGT-GGAAGATGCACG 441 consensus_4516#1 GAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGTAGGAAGATGCACG 433 **************** * *************************** ************ consensus_4516#0 TCGGGGCATCG-TTACGCTGGAAGAAAT--GGACCCAAACACG-AAAGCGTACTGGCGA- 496 consensus_4516#1 TCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAAGCGTACTGGCGAC 493 ******** ** *************** * ********** *************** consensus_4516#0 AAGCTAAGGCGAATGGGCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAG 556 consensus_4516#1 AAGCTAAGGCGAATG---TGCGCTGCANGCGCAAC------------------------- 525 *************** *** *** *** consensus_4516#0 CGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTT 616 consensus_4516#1 ------------------------------------------------------------ consensus_4516#0 TCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAGCTGTACATTGAAAATA 676 consensus_4516#1 ------------------------------------------------------------ consensus_4516#0 AAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG 710 consensus_4516#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||