cluster # 4519

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Anopheles gambiae
cluster # 4519 cluster # 4519 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4519#0 length = 765 sequences # 2

consensus_4519#1 length = 556 sequences # 1

consensusID : consensus_4519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 765
fasta sequence

                              [GCAGAATCGCGCACGAGGGAGTATAAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACCTATGCACAGCAATTCTACGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGTAAATCTTTTGCGAATTCTCTATATGCAGTTTGACAAACTTTTANNANATTGGTTCACTTCCATTTTGCGCCTCGATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTTTACATAAAATATGATGTATTATGCTTCTTTCTTATAAGTGATCTA]

[+] EMBL BX467478             [GCAGAATCGCGCACGAGGGAGTATAAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACCTATGCACAGCAATTCTACGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGTAAATCTTTTGCGAATTCTCTATATGCAGTTTGACAAACTTTTANNANATTGGTTCACTTCCATTTTGCGCCTCGATTTAGTAG                                                                       ]
[+] EMBL BX622295             [                                                                                                                                                                           TTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTATTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGT AATCTTTTGCGAA TCTCTATATGCAG TTGA AAA  TTTA  A ATT GTT AATT CA TTTGCGCCTCGATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTTTACATAAAATATGATGTATTATGCTTCTTTCTTATAAGTGATCTA]




>consensus_4519#0
GCAGAATCGCGCACGAGGGAGTATAAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCC
ATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTG
TTTACCTATGCACAGCAATTCTACGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATG
TTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGC
GTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCA
CGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGC
TTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTG
GTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAG
CTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTG
CGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCT
ATTTGTACAGTAAATCTTTTGCGAATTCTCTATATGCAGTTTGACAAACTTTTANNANAT
TGGTTCACTTCCATTTTGCGCCTCGATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTT
TACATAAAATATGATGTATTATGCTTCTTTCTTATAAGTGATCTA

consensusID : consensus_4519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCGCTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTATAAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTATGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAA]

[+] EMBL BX615417             [CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCGCTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTATAAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTATGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAA]




>consensus_4519#1
CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCG
CTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTAT
AAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGA
TACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTAT
GGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCAC
GATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGG
TTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCA
GGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTG
CTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTC
TTTCTAAGTAAAGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4519#0      ------------------------------------------------------------
consensus_4519#1      CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCG 60
                                                                                  

consensus_4519#0      -------------------------------GCAGAATC---GCGCACG--AGGGAGTAT 24
consensus_4519#1      CTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTAT 120
                                                      * *** *   *** * *  *  ******

consensus_4519#0      AAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGA 84
consensus_4519#1      AAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGA 180
                      ************** *********************************************

consensus_4519#0      TACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACCTATGCACAGCAATTCTAC 144
consensus_4519#1      TACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTAT 240
                      ***************************************** ***************** 

consensus_4519#0      GGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCAC 204
consensus_4519#1      GGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCAC 300
                      ************************************************************

consensus_4519#0      GATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGG 264
consensus_4519#1      GATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGG 360
                      ************************************************************

consensus_4519#0      TTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCA 324
consensus_4519#1      TTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCA 420
                      ************************************************************

consensus_4519#0      GGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTG 384
consensus_4519#1      GGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTG 480
                      ************************************************************

consensus_4519#0      CTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTC 444
consensus_4519#1      CTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTC 540
                      ************ ****** ****************************************

consensus_4519#0      TTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAA 504
consensus_4519#1      TTTCTAAGTAAAGTAA-------------------------------------------- 556
                      ****************                                            

consensus_4519#0      CGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTG 564
consensus_4519#1      ------------------------------------------------------------
                                                                                  

consensus_4519#0      AAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGTAAATCTTTTGCGA 624
consensus_4519#1      ------------------------------------------------------------
                                                                                  

consensus_4519#0      ATTCTCTATATGCAGTTTGACAAACTTTTANNANATTGGTTCACTTCCATTTTGCGCCTC 684
consensus_4519#1      ------------------------------------------------------------
                                                                                  

consensus_4519#0      GATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTTTACATAAAATATGATGTATTATGC 744
consensus_4519#1      ------------------------------------------------------------
                                                                                  

consensus_4519#0      TTCTTTCTTATAAGTGATCTA 765
consensus_4519#1      ---------------------