These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 930 fasta sequence [TGTCAAACGCCACGAGTTGAAGTAAACAAAGTGCACGGTTTTACGTTCCCTTTCTGGG---TCATTAGAAACCCACAAATTTGTTTAAAAATACATCCAAATACTGTACAAACTGTAGTAAAACATGTCCGTAAGCTTTACCCGTCGAAGTACACGATTGGAGCTGCTCAGTGCACGGGCATTGCCACAGCAAAAGATCATCGTTATAACCGATAAACTAGGCTTTGAACCAAATGCAAATAAAGTCACAACTAGCTGGCTAAGCGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGACCCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCAGAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCG-TCGAGCACGTGTTCGTGTGGATTGTGGAGCACAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGA-GCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGTCGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCACAT] [+] EMBL CNS08SA8 [TGTCAAACGCCACGAGTTGAAGTAAACAAAGTGCACGGTTTTACGTTCCCTTTCTGGG TCATTAGAAACCCACAAATTTGTTTAAAAATACATCCAAATACTGTACAAACTGTAGTAAAACATGTCCGTAAGCTTTACCCGTCGAAGTACACGATTGGAGCTGCTCAGTGCACGGGCATTGCCACAGCAAAAGATCATCGTTATAACCGATAAACTAGGCTTTGAACCAAATGCAAATAAAGTCACAACTAGCTGGCTAAGCGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGACCCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCAGAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCG TCGAGCACGTGTTCGTGTGGATTGTGGAGCACAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGA GCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGTCGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACG ] [+] EMBL CNS095ZK [ AAACAAAGTGCTCGATTTTACGTTCCCTTTCTGGGGGAACATAAAAAACACACAAATTTGTTGAAAAATACATCCAAATAGTGTACAAACTGTCCTTAAACATGTCCGTAAGCTTTACCCGTCGAAGTACTCGGTTGGAGCTGCTCAGTGCACGGGCATTGCCACAGCAAAAGGTCATCGTTATAACCGATAAACTAGGCTTTGAACCAAACGCAAATAAAGTCACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGACCCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCGCAGCTAGAGCGTCGATTTGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCGCTCGAGCACGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGATGCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGTCGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGGGTTCTTCAAAACACTCCCCGAA GAGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCACAT] consensusID : consensus_4522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [TGCTTGCCACATTTTAGATAAACTAGGATTTGAACCAAATGCAAATAAAGTAACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTATCACCGCTGGTGTGACCCATTTGAACGAATCGTCAAAATACCTGCTGCTGATCCTCTCGCAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCACAGTGCAAAAAGGATGCCACCGTCGACCACGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGATGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAACACCGGAGCCGTCACGCACAAGTATTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGAGCAGCTGCGACCAAAGCAGCTACGGTTTCGATGGAGGAAAATCCACCGCCGAATCCAGCCAGCTTGGGTACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTGTAAGTATTGCAAGTTGTCTTTTTACGTTCGATTTTGTAATATTTTGGAACGTTTTTTTAGCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCACCCGGACGCTGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTT] [+] EMBL BX618875 [TGCTTGCCACATTTTAGATAAACTAGGATTTGAACCAAATGCAAATAAAGTAACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTATCACCGCTGGTGTGACCCATTTGAACGAATCGTCAAAATACCTGCTGCTGATCCTCTCGCAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCACAGTGCAAAAAGGATGCCACCGTCGACCACGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGATGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAACACCGGAGCCGTCACGCACAAGTATTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGAGCAGCTGCGACCAAAGCAGCTACGGTTTCGATGGAGGAAAATCCACCGCCGAATCCAGCCAGCTTGGGTACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTGTAAGTATTGCAAGTTGTCTTTTTACGTTCGATTTTGTAATATTTTGGAACGTTTTTTTAGCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCACCCGGACGCTGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4522#0 TGTCAAACGCCACGAGTTGAAGTAAACAAAGTGCACGGTTTTACGTTCCCTTTCTGGGTC 60 consensus_4522#1 ------------------------------------------------------------ consensus_4522#0 ATTAGAAACCCACAAATTTGTTTAAAAATACATCCAAATACTGTACAAACTGTAGTAAAA 120 consensus_4522#1 ------------------------------------------------------------ consensus_4522#0 CATGTCCGTAAGCTTTACCCGTCGAAGTACACGATTGGAGCTGCTCAGTGCACGGGCATT 180 consensus_4522#1 ------------------------------------------------------------ consensus_4522#0 GCCACAGCAAAAGATCATCGTTATAACCGATAAACTAGGCTTTGAACCAAATGCAAATAA 240 consensus_4522#1 -----------TGCTTGCCAC-ATTTTAGATAAACTAGGATTTGAACCAAATGCAAATAA 48 * * * ** *********** ******************** consensus_4522#0 AGTCACAACTAGCTGGCTAAGCGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGAC 300 consensus_4522#1 AGTAACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTATCACCGCTGGTGTGAC 108 *** ***** *********** ********************** * **** ******** consensus_4522#0 CCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCAGAGCTAGAGCGCCGATT 360 consensus_4522#1 CCATTTGAACGAATCGTCAAAATACCTGCTGCTGATCCTCTCGCAGCTAGAGCGCCGATT 168 ****************** ******** ************** **************** consensus_4522#0 TGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCGTCGAGCA 420 consensus_4522#1 TGAACCGCGCCAAATATTCCACTACATCGCACAGTGCAAAAAGGATGCCACCGTCGACCA 228 ****************************** ********** *************** ** consensus_4522#0 CGTGTTCGTGTGGATTGTGGAGCACAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGA 480 consensus_4522#1 CGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGA 288 ************************ *********************************** consensus_4522#0 GCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAA 540 consensus_4522#1 GCATATGGCCGACAGTGTGATAACGTTCGATGACCGGCAGCACCTGTCGCTGCTGGTAAA 348 ****************************** ***************************** consensus_4522#0 GAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGAT 600 consensus_4522#1 GAAAAACACCGGAGCCGTCACGCACAAGTATTACGAGTTTGATCCGCTGAAAGATTCGAT 408 ***** ************************ ***************************** consensus_4522#0 CACTGTTGTGGAAGCAAAGCGAGCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGT 660 consensus_4522#1 CACTGTTGTGGAAGCAAAGCGAGCAGCTGCGACCAAAGCAGCTACGGTTTCGATGGAGGA 468 *************************** *************** *************** consensus_4522#0 CGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGA 720 consensus_4522#1 AAATCCACCGCCGAATCCAGCCAGCTTGGGTACGTTCAAAATCGATCTGAAAGATGAGGA 528 **************** *********** ***************************** consensus_4522#0 GGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTCTTCAAAACACTCCCCGAAGG 780 consensus_4522#1 GGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTGT---AAGTATTGC------- 578 *************************************** * ** * * * consensus_4522#0 AGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGA 840 consensus_4522#1 --AAGTTGTCTTTTTACGTTCGATTTTG-----TAATATTTTGGAACGTTTTTTTAGCTT 631 * ** * * * * ** * * ** ** ** * * consensus_4522#0 TGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACGCAAAAAAA 900 consensus_4522#1 CAAAACACTCCCCGAAGGAGGAAAGATCCTGTAC-CACCCGGACGCTGAGGATGATCTTG 690 * ** ** * ** * ** *** * ** ** * consensus_4522#0 AAAAAAAAAAAAAAAAAAAAAAAGCCACAT 930 consensus_4522#1 ACGAGGAGGATCCCGACGATGACTT----- 715 * * * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||