These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG] [+] EMBL BM578286 [CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG] consensusID : consensus_4524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence [CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACACTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA] [+] EMBL BM625230 [CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACACTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA] [+] EMBL BM653454 [ CGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCATCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGGCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4524#0 --------------------------------------CCGCCGCATCCACCGCTGCAGA 22 consensus_4524#1 CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACA 60 * * * ** * consensus_4524#0 GCTGCACCAG-AAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC 81 consensus_4524#1 CTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC 120 *** * * *********************************************** consensus_4524#0 TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA 141 consensus_4524#1 TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA 180 ************************************************************ consensus_4524#0 GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA 201 consensus_4524#1 GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA 240 ************************************************************ consensus_4524#0 GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA 261 consensus_4524#1 GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA 300 ************************************************************ consensus_4524#0 GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA 321 consensus_4524#1 GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA 360 ************************************************************ consensus_4524#0 CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT 381 consensus_4524#1 CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT 420 ************************************************************ consensus_4524#0 TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG 441 consensus_4524#1 TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG 480 ************************************************************ consensus_4524#0 CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGA 501 consensus_4524#1 CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA------- 533 ***************************************************** consensus_4524#0 AAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCG 561 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG 613 consensus_4524#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||