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Anopheles gambiae
cluster # 4524 cluster # 4524       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4524#0 length = 613 sequences # 1  
consensus_4524#1 length = 533 sequences # 2  

consensusID : consensus_4524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG]

[+] EMBL BM578286             [CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG]


>consensus_4524#0 CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTG GGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCA AGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATA CTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGAC CACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCC AGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCT GTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGC GCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAA GCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGA GTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACG GCTGGCGAAAACG



consensusID : consensus_4524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence
                              [CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACACTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA]

[+] EMBL BM625230             [CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACACTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA]
[+] EMBL BM653454             [                                                                                        CGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCATCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGGCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAA                                                                                              ]


>consensus_4524#1 CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACA CTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4524#0      --------------------------------------CCGCCGCATCCACCGCTGCAGA 22
consensus_4524#1      CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACA 60
                                                                  * *     *   ** *

consensus_4524#0      GCTGCACCAG-AAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC 81
consensus_4524#1      CTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC 120
                        *** *    * ***********************************************

consensus_4524#0      TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA 141
consensus_4524#1      TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA 180
                      ************************************************************

consensus_4524#0      GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA 201
consensus_4524#1      GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA 240
                      ************************************************************

consensus_4524#0      GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA 261
consensus_4524#1      GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA 300
                      ************************************************************

consensus_4524#0      GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA 321
consensus_4524#1      GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA 360
                      ************************************************************

consensus_4524#0      CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT 381
consensus_4524#1      CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT 420
                      ************************************************************

consensus_4524#0      TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG 441
consensus_4524#1      TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG 480
                      ************************************************************

consensus_4524#0      CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGA 501
consensus_4524#1      CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA------- 533
                      *****************************************************       

consensus_4524#0      AAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCG 561
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      CAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG 613
consensus_4524#1      ----------------------------------------------------
                                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)