These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGGTCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAGCGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTGGAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAAGCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTATGAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGAAGATGGTGCTGGGGATCGAACATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACTGGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATTCCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGTGATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCAC] [+] EMBL BM623165 [CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGGTCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAGCGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTGGAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAAGCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTATGAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGAAGATGGTGCTGGGGATCGAACATCCTC ] [+] EMBL BM584344 [ ccgCGAGTGGAATGGCCGCTGGAGCGACAAATCCCGGGAGTGGAAGTCCCTCAACCAGGCGGAAAGGAAGCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTATGAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGACGATGGTGCTGGGGATCGATCATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACTGGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATTCCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGTGATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCAC] consensusID : consensus_4528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [CCGCGGACGCGTGGGTTCCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACAACGGGTTCCGGTGTGGTGATTGCACTGATGCAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATCAATG] [+] EMBL BM583426 [CCGCGGACGCGTGGGTTCCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACAACGGGTTCCGGTGTGGTGATTGCACTGATGCAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATCAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4528#0 CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGG 60 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 TCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAG 120 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 CGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTG 180 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 GAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAA 240 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 GCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTAT 300 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 GAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGA 360 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 AGATGGTGCTGGGGATCGAACATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACT 420 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 GGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATT 480 consensus_4528#1 -------------------------------------------CCGCGGACGCGTGGGTT 17 * * ** consensus_4528#0 CCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGT 540 consensus_4528#1 CCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACAACGGGTTCCGGTGTGGT 77 ************ *********************** ******** ************** consensus_4528#0 GATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGT 600 consensus_4528#1 GATTGCACTGATGCAAAA-GTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGT 136 ****************** ***************************************** consensus_4528#0 TCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCT 660 consensus_4528#1 TCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCT 196 ************************************************************ consensus_4528#0 TCCAGCACCACGATCAC------------------------------- 677 consensus_4528#1 TCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATCAATG 244 ***************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||