cluster # 4532

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Anopheles gambiae
cluster # 4532 cluster # 4532 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4532#0 length = 767 sequences # 1

consensus_4532#1 length = 645 sequences # 2

consensusID : consensus_4532#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 767
fasta sequence

                              [AATCGTAGCCGCAGCCGTAGTTACTAAAAGAGCATACACACATTTCGGATCTCGTAGGTGGTTTTGTAGCATGAAGTCATCCAGGCGGGTGTGAAGTTCTTTATGCCGAAGCGTTTTCCTTCACATGAGGTATCTCTACTAAGAATAGAAAAAATTAAAATCAAAACACATCCTTATAAGACCAATATAAACGATATCTAAACAGTCGTAGAAAATCTTCTAGTGTGCAAGTTGATTCCCCTACATCTACCATTATATTACCAGGAGCGTTATACCCATCTCAACAGCGTGTGTCAGCTATACTTCATCTTTTCATTTCAACGATAAATGGTGTGAAAGATCCCTCGATATATCTGCAGGTAGCGTGACTTTATTCTTTATTTTGTATACTAGGAACATTGTTGACAGAACTAATTCGATTCGCGACATAAGTATCAGCATAGTTCTACGAGATAAAAATAATGTTTAGGACGAAGATTCTATAAAATGTACAAGTAAAAATTCATTTTTTTTATATTTCAATTGCTTTCACGCTGAAACAATTAGCTTGATTGCCAATCCATGATTGGATGTGATAAGTTTTCAAGAATGTGTCATTCAATGGTATCAATGCATTATTATTTGGTTTATTGCTATTAAGATTAAATAGTAACTTATTGAGTCGTTGACTATGCTTGCATTAATACTACTTTAGTATTATTGTCACTACATATATCAGGGATAACGATCATTGTTTTCCACTGAAAGAGAATAATAAGCATAATATA]

[+] EMBL BX625579             [AATCGTAGCCGCAGCCGTAGTTACTAAAAGAGCATACACACATTTCGGATCTCGTAGGTGGTTTTGTAGCATGAAGTCATCCAGGCGGGTGTGAAGTTCTTTATGCCGAAGCGTTTTCCTTCACATGAGGTATCTCTACTAAGAATAGAAAAAATTAAAATCAAAACACATCCTTATAAGACCAATATAAACGATATCTAAACAGTCGTAGAAAATCTTCTAGTGTGCAAGTTGATTCCCCTACATCTACCATTATATTACCAGGAGCGTTATACCCATCTCAACAGCGTGTGTCAGCTATACTTCATCTTTTCATTTCAACGATAAATGGTGTGAAAGATCCCTCGATATATCTGCAGGTAGCGTGACTTTATTCTTTATTTTGTATACTAGGAACATTGTTGACAGAACTAATTCGATTCGCGACATAAGTATCAGCATAGTTCTACGAGATAAAAATAATGTTTAGGACGAAGATTCTATAAAATGTACAAGTAAAAATTCATTTTTTTTATATTTCAATTGCTTTCACGCTGAAACAATTAGCTTGATTGCCAATCCATGATTGGATGTGATAAGTTTTCAAGAATGTGTCATTCAATGGTATCAATGCATTATTATTTGGTTTATTGCTATTAAGATTAAATAGTAACTTATTGAGTCGTTGACTATGCTTGCATTAATACTACTTTAGTATTATTGTCACTACATATATCAGGGATAACGATCATTGTTTTCCACTGAAAGAGAATAATAAGCATAATATA]




>consensus_4532#0
AATCGTAGCCGCAGCCGTAGTTACTAAAAGAGCATACACACATTTCGGATCTCGTAGGTG
GTTTTGTAGCATGAAGTCATCCAGGCGGGTGTGAAGTTCTTTATGCCGAAGCGTTTTCCT
TCACATGAGGTATCTCTACTAAGAATAGAAAAAATTAAAATCAAAACACATCCTTATAAG
ACCAATATAAACGATATCTAAACAGTCGTAGAAAATCTTCTAGTGTGCAAGTTGATTCCC
CTACATCTACCATTATATTACCAGGAGCGTTATACCCATCTCAACAGCGTGTGTCAGCTA
TACTTCATCTTTTCATTTCAACGATAAATGGTGTGAAAGATCCCTCGATATATCTGCAGG
TAGCGTGACTTTATTCTTTATTTTGTATACTAGGAACATTGTTGACAGAACTAATTCGAT
TCGCGACATAAGTATCAGCATAGTTCTACGAGATAAAAATAATGTTTAGGACGAAGATTC
TATAAAATGTACAAGTAAAAATTCATTTTTTTTATATTTCAATTGCTTTCACGCTGAAAC
AATTAGCTTGATTGCCAATCCATGATTGGATGTGATAAGTTTTCAAGAATGTGTCATTCA
ATGGTATCAATGCATTATTATTTGGTTTATTGCTATTAAGATTAAATAGTAACTTATTGA
GTCGTTGACTATGCTTGCATTAATACTACTTTAGTATTATTGTCACTACATATATCAGGG
ATAACGATCATTGTTTTCCACTGAAAGAGAATAATAAGCATAATATA

consensusID : consensus_4532#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGATGCATTATTATTTGGTTTATTGCTATTAAGATTAAATAGTAACTTATTGAGTCGTTGACTATGCTTGCATTAATACTACTTTAGTATTATTGTCACTACATATATCAGGGATAACGATCATTGTTTTCAACTGAAAGAGAATAATAAGCATAATATATTTGACATACAATGGAAGGTGTGCTGTATACGTCAGCAAATCCAATGGCATGACGCATAAAATATGATGTGCGAAATTATAATCATAAAACTTACACAAGATTGTAATATATAAACAAAAAATCACAATAGACGCAATGTTTGAAGGCGAAAAGTTTGTGCCGTATAATATGTATGGCATAATTGCGTAAATAATTTGCCAACAATATAATTCTTTGCTTTACTGAATTTGCCAGCGAAAGTTTTGTTGTTTATTAATCAAGAGCTCAACATGAAATGGCTAATTAAAATGAACGCACCGTGCTGAAGATGGGATTGATACTGTACCCCAAACTGTGTTGGAAGACGTTTAAACACGTTAGTGTATAGACACTTTGCACTGAACTGATTGCTACAAATGTTTAAATTGATTATAACAGTGAGATTTTGAAGTGAATTGTGTGATGGAATTGGTCATTTAA]

[+] EMBL BM589920             [CCGCCCACGCGTCCGCCCACGCGTCCGATGCATTATTATTTGGTTTATTGCTATTAAGATTAAATAGTAACTTATTGAGTCGTTGACTATGCTTGCATTAATACTACTTTAGTATTATTGTCACTACATATATCAGGGATAACGATCATTGTTTTCAACTGAAAGAGAATAATAAGCATAATATATTTGACATACAATGGAAGGTGTGCTGTATACGTCAGCAAATCCAATGGCATGACGCATAAAATATGATGTGCGAAATTATAATCATAAAACTTACACAAGATTGTAATATATAAACAAAAAATCACAATAGACGCAATGTTTGAAGGCGAAAAGTTTGTGCCGTATAATATGTATGGCATAATTGCGTAAATAATTTGCCAACAATATAATTCTTTGCTTTACTGAATTTGCCAGCGAAAGTTTTGTTGTTTATTAATCAAGAGCTCAACATGAAATGGCTAATTAAAATGAACGCACCGTGCTGAAGATGGGATTGATACTGTACCCCAAACTGTGTTGGAAGACGTTTAAACACGTTAGTGTATAGACACTTTGCACTGAACTGATTGCTACAAATGTTTAAATTGATTATAACAGTGAGATTTTGAAGTGAATTGTGTGATGGAATTGGTCATTTAA]
[-] EMBL BX614650             [                                                                                                                                                                                                                                                                                        ACAGGATTGTAATATATAAACAAAAAATCACAATTGACGCAATGTTTGAAGGCGAAAAGTTTGTCCCGTATAATATGTAGGGCATAATGGCGTAAATAATTTGCCACCAATATAA                                                                                                                                                                                                                                                          ]




>consensus_4532#1
CCGCCCACGCGTCCGCCCACGCGTCCGATGCATTATTATTTGGTTTATTGCTATTAAGAT
TAAATAGTAACTTATTGAGTCGTTGACTATGCTTGCATTAATACTACTTTAGTATTATTG
TCACTACATATATCAGGGATAACGATCATTGTTTTCAACTGAAAGAGAATAATAAGCATA
ATATATTTGACATACAATGGAAGGTGTGCTGTATACGTCAGCAAATCCAATGGCATGACG
CATAAAATATGATGTGCGAAATTATAATCATAAAACTTACACAAGATTGTAATATATAAA
CAAAAAATCACAATAGACGCAATGTTTGAAGGCGAAAAGTTTGTGCCGTATAATATGTAT
GGCATAATTGCGTAAATAATTTGCCAACAATATAATTCTTTGCTTTACTGAATTTGCCAG
CGAAAGTTTTGTTGTTTATTAATCAAGAGCTCAACATGAAATGGCTAATTAAAATGAACG
CACCGTGCTGAAGATGGGATTGATACTGTACCCCAAACTGTGTTGGAAGACGTTTAAACA
CGTTAGTGTATAGACACTTTGCACTGAACTGATTGCTACAAATGTTTAAATTGATTATAA
CAGTGAGATTTTGAAGTGAATTGTGTGATGGAATTGGTCATTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4532#0      AATCGTAGCCGCAGCCGTAGTTACTAAAAGAGCATACACACATTTCGGATCTCGTAGGTG 60
consensus_4532#1      ------------------------------------------------------------
                                                                                  

consensus_4532#0      GTTTTGTAGCATGAAGTCATCCAGGCGGGTGTGAAGTTCTTTATGCCGAAGCGTTTTCCT 120
consensus_4532#1      ------------------------------------------CCGCCCACGCGTCCGCCC 18
                                                                  *** * ****   ** 

consensus_4532#0      TCACAT--GAGGTATCTCTACTAAGAATAGAAAAAATTAAAATCAAAACACATCCTTATA 178
consensus_4532#1      ACGCGTCCGATGCATTATTATTTGGTTTATTGCTA-TTAAGATTAAATAGTAACTTATTG 77
                       * * *  ** * **   ** *  *  **     * **** ** ***    * * *  * 

consensus_4532#0      AGACCAATATAAACGATATCTAAACAGTCGTAGAAAATCTTCTAGTGTGCAAGTTGATTC 238
consensus_4532#1      AGTC----GTTGACTATGCTTG------CATTAATACTACTTTAGTAT------TATTGT 121
                      ** *     *  ** **   *       * *  * * *  * **** *      *  *  

consensus_4532#0      CCCTACATCTACCATTATATTACCAGGAGCGTTATACCCATCTCAACAGCGTGTGTCAGC 298
consensus_4532#1      CACTACATATATCA----GGGATAACGATCATTGTTTTCAACTGAA-AGAGAATAATAAG 176
                      * ****** ** **       *  * ** * ** *   ** ** ** ** *  *   *  

consensus_4532#0      TATACTTCATCTTTTCATTTCAACGATAAATGGTGTGAAAGATCCCTCGATATATCTGCA 358
consensus_4532#1      CATAATATAT-TTGACAT----ACAATGGAAGGTGTGCTGTATACGTCAGCAAATCCA-- 229
                       *** *  ** **  ***    ** **  * ******    ** * **   * ***    

consensus_4532#0      GGTAGCGTGACTTTATTCTTTATTTTGTATACTAGGAACATTGTTGACAGAACTAATTCG 418
consensus_4532#1      -ATGGCATGACGC-ATAAAATATGATGTGC----GAAATTATAATCATAAAACTTACACA 283
                        * ** ****   **    ***  ***      * **   *  * * * **** *  * 

consensus_4532#0      AT-TCGCGACATAAGTATCAGCATAGTTCTACGAGATAAAAATAATGTTT-AGGACGAAG 476
consensus_4532#1      AGATTGTAATATA----TAAACAAAAAATCACA--ATAGACGCAATGTTTGAAGGCGAAA 337
                      *  * *  * ***    * * ** *     **   *** *   ******* * * **** 

consensus_4532#0      ATTCTATAAAATGTA-CAAGTAAAAATTCATTTTTTTTATATTTCAATTGCTTT----CA 531
consensus_4532#1      AGTTTGTGCCGTATAATATGTATGGCATAATTGCGTAAATAATTTGCCAACAATATAATT 397
                      * * * *    * **  * ***     * ***   *  *** **      *  *      

consensus_4532#0      CGCTGAAACAATTAGCTTGATTGCCAATCCATGATTGGATGTGA--TAAGTTTTCAAGAA 589
consensus_4532#1      CTTTGCTTTACTGAATTTGCCAGCGAAAGTTTTGTTGTTTATTAATCAAGAGCTCAACAT 457
                      *  **    * * *  ***   ** **    *  ***  * * *   ***   **** * 

consensus_4532#0      TGTGTCATTCAATGGTATCAATGCATTATTATTTGGTTT--ATTGCTATTAAGATTAAAT 647
consensus_4532#1      GAAATGGCTAATTAAAATGAACGCACCGTGCTGAAGATGGGATTGATACTGTACCCCAA- 516
                          *   * * *   ** ** ***   *  *   * *   **** ** *       ** 

consensus_4532#0      AGTAACTTATTGAGTCGTTGACTATGCT--TGCATTAATACTACTTTAGTATTATTGTCA 705
consensus_4532#1      ACTGTGTTGGAAGACGTTTAAACACGTTAGTGTATAGACACT-TTGCACTGAACTGATTG 575
                      * *   **         ** *  * * *  ** **  * ***  *  * *    *  *  

consensus_4532#0      CTACATATATCAGGGATAACGATCATTGTTTTCCACTGAAAGAGAATAATAAGCATAATA 765
consensus_4532#1      CTACAAATGTTTAAATTGATTATAACAGTGAGATTTTGAAGTGAATTGTGTGATGGAATT 635
                      ***** ** *      * *  ** *  **       ****    * *         *** 

consensus_4532#0      TA-------- 767
consensus_4532#1      GGTCATTTAA 645