cluster # 4543

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4543 cluster # 4543 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4543#0 length = 716 sequences # 2

consensus_4543#1 length = 114 sequences # 1

consensusID : consensus_4543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 716
fasta sequence

                              [CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGTTAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTTAAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTATTGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCCCCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAAGCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGACATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACACATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCTCGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGTGGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACCGCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGTGGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG]

[+] EMBL BM581605             [CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGTTAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTTAAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTATTGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCCCCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAAGCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGACATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACACATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCTCGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGTGGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACCGCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGA                                                                        ]
[+] EMBL BM575053             [                     ccgGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGTTAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTTAAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTATTGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCCCCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAAGCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGACATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACACATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCTCGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGTGGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACCGCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGTGGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG]




>consensus_4543#0
CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGT
TAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTT
AAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTAT
TGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCC
CCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAA
GCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGA
CATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACA
CATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCT
CGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGT
GGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACC
GCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGT
GGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG

consensusID : consensus_4543#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 114
fasta sequence

                              [CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAATTGTTGGAAATGAATTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCCCCAGCGG]

[+] EMBL BX629285             [CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAATTGTTGGAAATGAATTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCCCCAGCGG]




>consensus_4543#1
CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAATTGTTGGAAATGAA
TTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCCCCAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4543#0      CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGT 60
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      TAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTT 120
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      AAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTAT 180
consensus_4543#1      -------------CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAAT 47
                                   ******************* ********** ************* **

consensus_4543#0      TGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCC 240
consensus_4543#1      TGTTGGAAATGAATTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCC 107
                      ********************** ** ***** ** ****** **** ****** ** ***

consensus_4543#0      CCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAA 300
consensus_4543#1      CCAGCGG----------------------------------------------------- 114
                      ******                                                      

consensus_4543#0      GCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGA 360
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      CATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACA 420
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      CATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCT 480
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      CGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGT 540
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      GGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACC 600
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      GCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGT 660
consensus_4543#1      ------------------------------------------------------------
                                                                                  

consensus_4543#0      GGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG 716
consensus_4543#1      --------------------------------------------------------