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Anopheles gambiae
cluster # 4548 cluster # 4548       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4548#0 length = 823 sequences # 1  
consensus_4548#1 length = 808 sequences # 1  
consensus_4548#2 length = 324 sequences # 1  

consensusID : consensus_4548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 823
fasta sequence
                              [CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA]

[+] EMBL BX467554             [CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA]


>consensus_4548#0 CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGT CGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGC TGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGC GTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCC GCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGA CGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCT GATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAA GCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCT GGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGT GCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCT CCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTC GGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACA ACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCT CTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA



consensusID : consensus_4548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 808
fasta sequence
                              [TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCTACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGATCCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACCGCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTATTTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGACGAAAATCTATCAAATCGAAACTCTGAT]

[+] EMBL BX625826             [TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCTACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGATCCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACCGCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTATTTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGACGAAAATCTATCAAATCGAAACTCTGAT]


>consensus_4548#1 TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCAC CGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCT CCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCT ACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGAT CCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCG GAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACC GCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCT CCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCA AAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCC ATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGT GGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGG CCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTAT TTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGA CGAAAATCTATCAAATCGAAACTCTGAT



consensusID : consensus_4548#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence
                              [GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCCGTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGATCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAANTGTGGATGAGGTG]

[+] EMBL BX468147             [GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCCGTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGATCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAANTGTGGATGAGGTG]


>consensus_4548#2 GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCC GTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGA TCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTG TCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAA GGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCG AGGAGCGTAANTGTGGATGAGGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4548#0      ------------------------------------------------------------
consensus_4548#2      GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCC 60
consensus_4548#1      TGCCCATGTCG--ATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGC 58
                                                                                  

consensus_4548#0      ------------------------------------------------------------
consensus_4548#2      GTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGA 120
consensus_4548#1      ACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTC 118
                                                                                  

consensus_4548#0      -CAGAATTCG-GCACGA---GGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCT 55
consensus_4548#2      TCGCGGTCCA-ATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCT 179
consensus_4548#1      CTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCG-GTTCGTCGCACAACCTCG 177
                              *      *        *****   * *    **  * *  **   * *  * 

consensus_4548#0      GTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGG-TCATGGGCTGCCTGAAGGGCA 114
consensus_4548#2      GTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCA 239
consensus_4548#1      CCTACAGCTCGTACTATCCCAGCTCGA-GCGGTTCCAGCTCGTACACGGCGTACAACGCT 236
                            * ****           **** *  *   * * ** *   * ** *  *  ** 

consensus_4548#0      AGGTGCTGCTCTACCTGGACGGTATGCTT-GGACTGCGCGAGGAGGAGGCACGCGCCTTC 173
consensus_4548#2      AGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTC 299
consensus_4548#1      GGATCCAGCAGCTCCTCGGCCGT-TGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTC 295
                       * * * **    *** * * ** ** **  *   ** *            * * ** **

consensus_4548#0      GA--GGAGCGTAAT-GTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACC 230
consensus_4548#2      GA--GGAGCGTAANTGTGGATGAGGTG--------------------------------- 324
consensus_4548#1      GTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGC 355
                      *   ***** * *  ** *     **                                  

consensus_4548#0      CACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTC 290
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      GTACCGCCCCGCAC-CAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGC 414
                                                                                  

consensus_4548#0      TGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAG- 349
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      TATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGC 474
                                                                                  

consensus_4548#0      -ATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCT 408
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      GACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAA 534
                                                                                  

consensus_4548#0      CATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAA 468
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      TGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGG 594
                                                                                  

consensus_4548#0      GAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCT 528
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      AACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCT 654
                                                                                  

consensus_4548#0      GCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGT 588
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      GGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCG 714
                                                                                  

consensus_4548#0      CCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGT 648
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      ACCTATTTATTGTCTCCTAATGCGAA-ACGTTATTTATTGAATGAGGAATAATAATAAAC 773
                                                                                  

consensus_4548#0      CGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTA 708
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      AAATCGACGAAAATCTATCAAATCGAAACTCTGAT------------------------- 808
                                                                                  

consensus_4548#0      CACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTT 768
consensus_4548#2      ------------------------------------------------------------
consensus_4548#1      ------------------------------------------------------------
                                                                                  

consensus_4548#0      CCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA 823
consensus_4548#2      -------------------------------------------------------
consensus_4548#1      -------------------------------------------------------
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)