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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence
[CCGGAGGAAATGAAATGAAATTATTTTACAGAGGAAAAAAAACAACACACAAAATAGGGTGAGATTCGAACGGCGAGAACGAAAACACATGAATCAAAGATTACTTTATTAACGTAAAACAGAAACAAAAAAACAAAAAACACACACTTTAAACATACACCACGAAACACACAACATAATAGGATAAAAAGTATAACAAATGAAAGGAAAAAAAAAAAACATAAAATATGAAGCAACAAAAAAACCTGATTGTGTGCTAGGAATAAAACAAAATAATACGATGAATGTCAGGCGAAGAAAGTATGAAACGCGCGGCGAAGACAAGAAGTTTATGTGTGTAGGAGAAAGTGACAATGAGAAAATGTGCTGTTTAGAGGTGCGCTTGGTTTATGCTAAACATGGGATAGGAGAGGCATGG-----GGGGGTTGTGGATAGGAAAATTCAAAACGAAAT-----AAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAAAGAAAATCCCAAACAC-GTAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATGGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGATGCGAAATAAAATGGATGGACCCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAAAGTGAATAAAATAAATGCTAAAAATATATATGTATATGAATATAAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAACAAAAAATAACATATAAAATATAATGGTTTGCTTTCGATTCNCTCCCAGATAGGTTTATGACTTTCTTGTATTTTTNTTTTGTGNGTATTATTTCTTACAAAATACACTCAAACNCCACGTATACGGAAGCAAATCAATAAAACTAGAACTTAATTTGCTTAAAAAACTATAATTTCCAAAGCATTACAACTCCACACATTGTTGTTTTCAAAAGTCACAGTTG]
[+] EMBL BM641500 [CCGGAGGAAATGAAATGAAATTATTTTACAGAGGAAAAAAAACAACACACAAAATAGGGTGAGATTCGAACGGCGAGAACGAAAACACATGAATCAAAGATTACTTTATTAACGTAAAACAGAAACAAAAAAACAAAAAACACACACTTTAAACATACACCACGAAACACACAACATAATAGGATAAAAAGTATAACAAATGAAAGGAAAAAAAAAAAACATAAAATATGAAGCAACAAAAAAACCTGATTGTGTGCTAGGAATAAAACAAAATAATACGATGAATGTCAGGCGAAGAAAGTATGAAACGCGCGGCGAAGACAAGAAGTTTATGTGTGTAGGAGAAAGTGACAATGAGAAAATGTGCTGTTTAGAGGTGCGCTTGGTTTATGCTAAACATGGGATAGGAGAGGCATGG GGGGGTTGTGGATAGGAAAATTCAAAACGAAAT AAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAAAGAAAATCCCAAACAC GTAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATGGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGATGCGAAATAAAATGGATGGACCCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCG ]
[+] EMBL BX623886 [ ACATGGGATGGGAGAGGCATGGGGGAAGGGGGTTGTGGATAGGAAAATTCAAAACGAAATAAAAAAAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAAC AAAAAAAAAAGAAAATCCCAAACACGGNAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAAT GCT ACTCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAAAGTGAATAAAATAAATGCTAAAAATATATATGTATATGAATATAAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAACAAAAAATAACATATAAAATATAATGGTTTGCTTTCGATTCNCTCCCAGATAGGTTTATGACTTTCTTGTATTTTTNTTTTGTGNGTATTATTTCTTACAAAATACACTCAAACNCCACGTATACGGAAGCAAATCAATAAAACTAGAACTTAATTTGCTTAAAAAACTATAATTTCCAAAGCATTACAACTCCACACATTGTTGTTTTCAAAAGTCACAGTTG]
consensusID : consensus_4557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[AGATCNCCACGAGGGTTAGGATAGGAAAATCAAAACGAANATAAAAAAAAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAGAAAATCCCAAACACGGAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAATGCTACTCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAACAGTGAATAAAATAAATGCTAAAAATATATATCGTATATGAATATACAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAAGGAAGAAATAACATATAANAGTATAATGGTTTGCTTTCGATTCACTCCCAGATAGGTTTATGACTTTCTTGTATTCTCACATTCATCGTGTGTATAATTTCTTACAAAATACACTCAAACACACGTTATACGGAACAAATCAATAAAACTAGAACTTAACTTTGCTTAAAAACTACTAATTTCCAAAACATTACAATCCACACATTGTNGATTTCA]
[+] EMBL BX466624 [AGATCNCCACGAGGGTTAGGATAGGAAAATCAAAACGAANATAAAAAAAAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAGAAAATCCCAAACACGGAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAATGCTACTCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAACAGTGAATAAAATAAATGCTAAAAATATATATCGTATATGAATATACAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAAGGAAGAAATAACATATAANAGTATAATGGTTTGCTTTCGATTCACTCCCAGATAGGTTTATGACTTTCTTGTATTCTCACATTCATCGTGTGTATAATTTCTTACAAAATACACTCAAACACACGTTATACGGAACAAATCAATAAAACTAGAACTTAACTTTGCTTAAAAACTACTAATTTCCAAAACATTACAATCCACACATTGTNGATTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4557#0 CCGGAGGAAATGAAATGAAATTATTTTACAGAGGAAAAAAAACAACACACAAAATAGGGT 60
consensus_4557#1 ------------------------------------------------------------
consensus_4557#0 GAGATTCGAACGGCGAGAACGAAAACACATGAATCAAAGATTACTTTATTAACGTAAAAC 120
consensus_4557#1 ------------------------------------------------------------
consensus_4557#0 AGAAACAAAAAAACAAAAAACACACACTTTAAACATACACCACGAAACACACAACATAAT 180
consensus_4557#1 ------------------------------------------------------------
consensus_4557#0 AGGATAAAAAGTATAACAAATGAAAGGAAAAAAAAAAAACATAAAATATGAAGCAACAAA 240
consensus_4557#1 ------------------------------------------------------------
consensus_4557#0 AAAACCTGATTGTGTGCTAGGAATAAAACAAAATAATACGATGAATGTCAGGCGAAGAAA 300
consensus_4557#1 ------------------------------------------------------------
consensus_4557#0 GTATGAAACGCGCGGCGAAGACAAGAAGTTTATGTGTGTAGGAGAAAGTGACAATGAGAA 360
consensus_4557#1 ------------------------------------------------------------
consensus_4557#0 AATGTGCTGTTTAGAGGTGCGCTTGGTTTATGCTAAACATGGGATAGGAGAGGCATGGGG 420
consensus_4557#1 ------------------------------------------------AGATCNCCACGA 12
*** *
consensus_4557#0 GGGTTGTGGATAGGAAAATTCAAAACGAAATAAAAAA------CGAACTATATCTATGAA 474
consensus_4557#1 GGGTTA-GGATAGGAAAATCAAAACGAANATAAAAAAAAAAAACGAACTATATCTATGAA 71
***** ************ *** * ******** *****************
consensus_4557#0 GCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAAAGAAAATCCCAAACACGTAAGACG 534
consensus_4557#1 GCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAA--AGAAAATCCCAAACACGGAAGACG 129
********************************** ***************** ******
consensus_4557#0 GAAGTAGATAGGGTGAGAAATAATAAGAATGGGTGCCGCCGATGCAACAACCCAGTGGGT 594
consensus_4557#1 GAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGT 189
****************************** *****************************
consensus_4557#0 CGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGATGCGAAATAAAATGGATGGACCCAA 654
consensus_4557#1 CGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAATGCT---ACTCAA 246
*********************************** ************* ** ***
consensus_4557#0 CGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAA-AGTG 713
consensus_4557#1 CGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAACAGTG 306
******************************************************* ****
consensus_4557#0 AATAAAATAAATGCTAAAAATATATAT-GTATATGAATATA-AAATGAATAGAGAGCGGG 771
consensus_4557#1 AATAAAATAAATGCTAAAAATATATATCGTATATGAATATACAAATGAATAGAGAGCGGG 366
*************************** ************* ******************
consensus_4557#0 AAAACAAAAAGGGGAAATAGGCAAACAAA-AAATAACATATAAAA-TATAATGGTTTGCT 829
consensus_4557#1 AAAACAAAAAGGGGAAATAGGCAAAGGAAGAAATAACATATAANAGTATAATGGTTTGCT 426
************************* ** ************* * **************
consensus_4557#0 TTCGATTCNCTCCCAGATAGGTTTATGACTTTCTTGTATTTTTNTTTT----GTGNGTAT 885
consensus_4557#1 TTCGATTCACTCCCAGATAGGTTTATGACTTTCTTGTATTCTCACATTCATCGTGTGTAT 486
******** ******************************* * ** *** ****
consensus_4557#0 TATTTCTTACAAAATACACTCAAACNCCACGTATACGGAAGCAAATCAATAAAACTAGAA 945
consensus_4557#1 AATTTCTTACAAAATACACTCAAACACACGTTATACGGAA-CAAATCAATAAAACTAGAA 545
************************ * ********* *******************
consensus_4557#0 CTTAA-TTTGCTTAAAAAACTATAATTTCCAAAGCATTACAACTCCACACATTGTTGTTT 1004
consensus_4557#1 CTTAACTTTGCTTAAAAACTACTAATTTCCAAAACATTACAA-TCCACACATTGTNGATT 604
***** ************ *********** ******** ************ * **
consensus_4557#0 TCAAAAGTCACAGTTG 1020
consensus_4557#1 TCA------------- 607
***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||