These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1064 fasta sequence [CCGGTAAAATTGACTAGTTTTTTCCTCGTGGAATTATATTCCTGTATATCAGTAAAATCCATGAAAATAATGTTAGAAACGTAGCTCATTGATTTTTCCCCCCCATTTCTCCCTGGTCTGACGCTGTTGTAGTGAACGCGTATCTTCAATAACAAATAATAATAGTCATCTTCCATCGTAAATTTGGCCGTGCTCCACCACATCATACGGTAATAGTTAAGTACCCCATCCATGAATAGTTAAGCATGGTCAAAACAAGCATTGCGTTCTATTTATGCAATTTTCACTCGTACACTCCCAGGTTTACTTCCTTATTTACAGTAAGCGTCCACAAGGTGCAGTACCATCGTACCTCAGCTGGCAGCCATAAGCATTACTCGGCAATGAATTAGTAGCGCATTACTCGACGATTTTAACCATGAGCCGTACGTACCAGCTAAACAAAGAGGAAGAGATAAAGGGAGAGTGAAAGAGGAGATAGCGTATATTAGTAAATAGTAATAGTTTCAGTTGGTCGTGGATCCCCTTTCGTTTGCATCTTTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCTATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGGAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGTTCCGTTCCCACCCTTTGAGTGGTTGGTAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGATCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTATTTTTTTTGTTTGATTGTTTTTAGATGTGGTAATATGGGAAGAAGGTTTAATGTGATTTGTTACACGGTGAAGATGGTGTATGGTGTGGTGTTGAAGTTGTTTAATTCTTCTTTAAATAATGCTTTTAATAAATAGTTTCAAGCTTCATAA] [+] EMBL BM649330 [CCGGTAAAATTGACTAGTTTTTTCCTCGTGGAATTATATTCCTGTATATCAGTAAAATCCATGAAAATAATGTTAGAAACGTAGCTCATTGATTTTTCCCCCCCATTTCTCCCTGGTCTGACGCTGTTGTAGTGAACGCGTATCTTCAATAACAAATAATAATAGTCATCTTCCATCGTAAATTTGGCCGTGCTCCACCACATCATACGGTAATAGTTAAGTACCCCATCCATGAATAGTTAAGCATGGTCAAAACAAGCATTGCGTTCTATTTATGCAATTTTCACTCGTACACTCCCAGGTTTACTTCCTTATTTACAGTAAGCGTCCACAAGGTGCAGTACCATCGTACCTCAGCTGGCAGCCATAAGCATTACTCGGCAATGAATTAGTAGCGCATTACTCGACGATTTTAACCATGAGCCGTACGTACCAGCTAAACAAAGAGGAAGAGATAAAGGGAGAGTGAAAGAGGAGATAGCGTATATTAGTAAATAGTAATAGTTTCAGTTGGTCGTGGATCCCCTTTCGTTTGCATCTTTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCTATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGGAGAAAGTCGTGC ] [+] EMBL BX627736 [ TTTGCATCTTTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCTATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATT GAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGTTCCGTTCCCACCCTTTGAGTGGTTGGTAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGATCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTATTTTTTTTGTTTGATTGTTTTTAGATGTGGTAATATGGGAAGAAGGTTTAATGTGATTTGTTACACGGTGAAGATGGTGTATGGTGTGGTGTTGAAGTTGTTTAATTCTTCTTTAAATAATGCTTTTAATAAATAGTTTCAAGCTTCATAA] consensusID : consensus_4563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [CCGCGGACGCGTGGGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGATCCGTTCCCACCCTTTGAGTGGTTGGAAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGACCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTAT] [+] EMBL BM644710 [CCGCGGACGCGTGGGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGATCCGTTCCCACCCTTTGAGTGGTTGGAAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGACCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4563#0 CCGGTAAAATTGACTAGTTTTTTCCTCGTGGAATTATATTCCTGTATATCAGTAAAATCC 60 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 ATGAAAATAATGTTAGAAACGTAGCTCATTGATTTTTCCCCCCCATTTCTCCCTGGTCTG 120 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 ACGCTGTTGTAGTGAACGCGTATCTTCAATAACAAATAATAATAGTCATCTTCCATCGTA 180 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 AATTTGGCCGTGCTCCACCACATCATACGGTAATAGTTAAGTACCCCATCCATGAATAGT 240 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 TAAGCATGGTCAAAACAAGCATTGCGTTCTATTTATGCAATTTTCACTCGTACACTCCCA 300 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 GGTTTACTTCCTTATTTACAGTAAGCGTCCACAAGGTGCAGTACCATCGTACCTCAGCTG 360 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 GCAGCCATAAGCATTACTCGGCAATGAATTAGTAGCGCATTACTCGACGATTTTAACCAT 420 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 GAGCCGTACGTACCAGCTAAACAAAGAGGAAGAGATAAAGGGAGAGTGAAAGAGGAGATA 480 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 GCGTATATTAGTAAATAGTAATAGTTTCAGTTGGTCGTGGATCCCCTTTCGTTTGCATCT 540 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 TTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCT 600 consensus_4563#1 -------------------------------------------------CCGCGGACGCG 11 * * * * consensus_4563#0 ATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGGAGAAAGTCGTG 660 consensus_4563#1 TGGGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTG-AGAAAGTCGTG 70 ********************************************* *********** consensus_4563#0 CCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGTTC 720 consensus_4563#1 CCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGATC 130 ********************************************************* ** consensus_4563#0 CGTTCCCACCCTTTGAGTGGTTGGTAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCG 780 consensus_4563#1 CGTTCCCACCCTTTGAGTGGTTGGAAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCG 190 ************************ *********************************** consensus_4563#0 ACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGATCATGTGTCACATCAGTTTTG 840 consensus_4563#1 ACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGACCATGTGTCACATCAGTTTTG 250 *************************************** ******************** consensus_4563#0 TTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTT 900 consensus_4563#1 TTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTT 310 ************************************************************ consensus_4563#0 CACAGTTCCTCTATTTTTTTTGTTTGATTGTTTTTAGATGTGGTAATATGGGAAGAAGGT 960 consensus_4563#1 CACAGTTCCTCTAT---------------------------------------------- 324 ************** consensus_4563#0 TTAATGTGATTTGTTACACGGTGAAGATGGTGTATGGTGTGGTGTTGAAGTTGTTTAATT 1020 consensus_4563#1 ------------------------------------------------------------ consensus_4563#0 CTTCTTTAAATAATGCTTTTAATAAATAGTTTCAAGCTTCATAA 1064 consensus_4563#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||