cluster # 4565

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Anopheles gambiae
cluster # 4565 cluster # 4565 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4565#0 length = 285 sequences # 2

consensus_4565#1 length = 127 sequences # 1

consensusID : consensus_4565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 285
fasta sequence

                              [AGCCGCCGAAATCACCCTTCACCATCACCTCACCGCCCGCCACCCATGTAGGGCCACATTTCGAGCTACCATCGTCGCGCACGTCCTCGCAGCTGAGCCACTCGGACGGCACGCACCTGACGCACTCGCGCAACCACTCGCAGGACAGTGCCACCTCGTACCGGTCGACCGATGGGTCGCGGACGTCGTACGAGACCGCCTCCTATCCGTACGATGCGTACGACAGCATTGTGCTGCCGCGGCGTGCCAGCCACTCGCAGGAGCCGACGTTCCAGTTTTTGCGCA]

[+] EMBL BX613970             [AGCCGCCGAAATCACCCTTCACCATCACCTCACCGCCCGCCACCCATGTAGGGCCACATTTCGAGCTACCATCGTCGCGCACGTCCTCGCAGCTGAGCCACTCGGACGGCACGCACCTGACGCACTCGCGCAACCACTCGCAGGACAGTGCCACCTCGTACCGGTCGACCGATGGGTCGCGGACGTCGTACGAGACCGCCTCCTATCCGTACGATGCGTACGACAGCATTGTGCTGCCGCGGCGTGCCAGCCACTCGCAGGAGCCGACGT               ]
[+] EMBL BX613969             [                                                                   ACCATCGTCGCGCACGTCCTCGCAGCTGAGCCACTCGGACGGCACGCACCTGACGCACTCGCGCAACCACTCGCAGGACAGTGCCACCTCGTACCGGTCGACCGATGGGTCGCGGACGTCGTACGAGACCGCCTCCTATCCGTACGATGCGTACGACAGCATTGTGCTGCCGCGGCGTGCCAGCCACTCGCAGGAGCCGACGTTCCAGTTTTTGCGCA]




>consensus_4565#0
AGCCGCCGAAATCACCCTTCACCATCACCTCACCGCCCGCCACCCATGTAGGGCCACATT
TCGAGCTACCATCGTCGCGCACGTCCTCGCAGCTGAGCCACTCGGACGGCACGCACCTGA
CGCACTCGCGCAACCACTCGCAGGACAGTGCCACCTCGTACCGGTCGACCGATGGGTCGC
GGACGTCGTACGAGACCGCCTCCTATCCGTACGATGCGTACGACAGCATTGTGCTGCCGC
GGCGTGCCAGCCACTCGCAGGAGCCGACGTTCCAGTTTTTGCGCA

consensusID : consensus_4565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [ATCGTCGCGCACGTCCTCGCAGCAGAGCCACTCGGACGGCACGCACCTGACGCACACGCGCAACCACACGCAGGACAGTGCCACCTCGGACCGGGCGACCGAAGGGGCGCGGACGACGAACGAGACC]

[+] EMBL BX613971             [ATCGTCGCGCACGTCCTCGCAGCAGAGCCACTCGGACGGCACGCACCTGACGCACACGCGCAACCACACGCAGGACAGTGCCACCTCGGACCGGGCGACCGAAGGGGCGCGGACGACGAACGAGACC]




>consensus_4565#1
ATCGTCGCGCACGTCCTCGCAGCAGAGCCACTCGGACGGCACGCACCTGACGCACACGCG
CAACCACACGCAGGACAGTGCCACCTCGGACCGGGCGACCGAAGGGGCGCGGACGACGAA
CGAGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4565#0      AGCCGCCGAAATCACCCTTCACCATCACCTCACCGCCCGCCACCCATGTAGGGCCACATT 60
consensus_4565#1      ------------------------------------------------------------
                                                                                  

consensus_4565#0      TCGAGCTACCATCGTCGCGCACGTCCTCGCAGCTGAGCCACTCGGACGGCACGCACCTGA 120
consensus_4565#1      ----------ATCGTCGCGCACGTCCTCGCAGCAGAGCCACTCGGACGGCACGCACCTGA 50
                                *********************** **************************

consensus_4565#0      CGCACTCGCGCAACCACTCGCAGGACAGTGCCACCTCGTACCGGTCGACCGATGGGTCGC 180
consensus_4565#1      CGCACACGCGCAACCACACGCAGGACAGTGCCACCTCGGACCGGGCGACCGAAGGGGCGC 110
                      ***** *********** ******************** ***** ******* *** ***

consensus_4565#0      GGACGTCGTACGAGACCGCCTCCTATCCGTACGATGCGTACGACAGCATTGTGCTGCCGC 240
consensus_4565#1      GGACGACGAACGAGACC------------------------------------------- 127
                      ***** ** ********                                           

consensus_4565#0      GGCGTGCCAGCCACTCGCAGGAGCCGACGTTCCAGTTTTTGCGCA 285
consensus_4565#1      ---------------------------------------------