These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [AGAATTGCCACGAGGTGTCTGGCGTTGAATACGATCTGATCTGTGCAGCAGCAGTTCCTTCACCCTGGCTCAATGTTGAGTTCGGCCCGTCTGTACGGTAGTGATACGATTGAAAATAACCCTCCCGCTGCGTTCGCCGTATCCTGCACAGGATATACCCACCTGGCACTGGTTCTGAACTTTGTCCCTGAAGCAACTGCTTTGCTGATGAGAACCTGCATACTTCAACAGCTGCCTGGGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCTGGTACAAGATCGACAAACGTGTTCAACTTCAACCTGCAACCTGACTGGATGCATGATCTGACAGCAGCCTGGACCTGTATCCTGGGTGAACNGTGGAGAAAGATGTTCCAGAAGAAAAACAAGCTGGAAAAATGGCTGAAAACAATGGCACCCTGCCGTGACCAATGCGACCGAAGGATTGNGCTGGCTGCAGAGTGAACCTGCTGGTGGCAAGTGATCTTGCGTGAACCCGGATACCCGGTGGTCCGTGGTCCCCTCGAGGCAACNGNGGGAGTGAACGTGCTTACGCAAAGNAATGACGACCAAATCGGNCCCGGAAACATGNCNTCTGNCCCAANAGCATAAAAGTNGNACCACCACCCCCNGAAACCGNGTTGCCAAGGCATTTAACACCGGGTGGANTTGGGTACTTGGCGCGNAGACCATATTCACACAAGTTAGGGCCCTACAAACAGGGACACCGGAAGGGGTTGACNATTGCCGCGGTCAAAATGTTTGCGNCNNC] [+] EMBL AL931140 [AGAATTGCCACGAGGTGTCTGGCGTTGAATACGATCTGATCTGTGCAGCAGCAGTTCCTTCACCCTGGCTCAATGTTGAGTTCGGCCCGTCTGTACGGTAGTGATACGATTGAAAATAACCCTCCCGCTGCGTTCGCCGTATCCTGCACAGGATATACCCACCTGGCACTGGTTCTGAACTTTGTCCCTGAAGCAACTGCTTTGCTGATGAGAACCTGCATACTTCAACAGCTGCCTGGGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCTGGTACAAGATCGACAAACGTGTTCAACTTCAACCTGCAACCTGACTGGATGCATGATCTGACAGCAGCCTGGACCTGTATCCTGGGTGAACNGTGGAGAAAGATGTTCCAGAAGAAAAACAAGCTGGAAAAATGGCTGAAAACAATGGCACCCTGCCGTGACCAATGCGACCGAAGGATTGNGCTGGCTGCAGAGTGAACCTGCTGGTGGCAAGTGATCTTGCGTGAACCCGGATACCCGGTGGTCCGTGGTCCCCTCGAGGCAACNGNGGGAGTGAACGTGCTTACGCAAAGNAATGACGACCAAATCGGNCCCGGAAACATGNCNTCTGNCCCAANAGCATAAAAGTNGNACCACCACCCCCNGAAACCGNGTTGCCAAGGCATTTAACACCGGGTGGANTTGGGTACTTGGCGCGNAGACCATATTCACACAAGTTAGGGCCCTACAAACAGGGACACCGGAAGGGGTTGACNATTGCCGCGGTCAAAATGTTTGCGNCNNC] consensusID : consensus_4566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence [CCGCGATTGAAAACAACCCTCCCGCTACGTTCGCCGTATCCCTGCGAAGGATATACCCACCGGCACGGTTCGAACTTTGTCCCGAAGCAACGCTTTGCGATGAGAACCGCCTACTTCAAACAGCTGCCGGGTGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCGGTACAAGATCGACAAAGTGTTCAACTTCAACCGCAACCTGACGGAGCAGATCGACAGCAGCCTGGACCGTATCCGGGTGAACGTGGAGAAAGAGTTCCAGAAGAAAAACAAGCGGAAAAAGGCGAAAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAGGATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCAACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGACCGTGCAGCTTACCGTGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGCCCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCACACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGCCGCATGCCCGAGTCGGGCAATGCGCAGCAGATCGAATGGGAGCCGGTCGGGTCNGAGCTGTCCTATCTGGTGCAAAANGGTGA] [+] EMBL BM612057 [CCGCGATTGAAAACAACCCTCCCGCTACGTTCGCCGTATCCCTGCGAAGGATATACCCACCGGCACGGTTCGAACTTTGTCCCGAAGCAACGCTTTGCGATGAGAACCGCCTACTTCAAACAGCTGCCGGGTGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCGGTACAAGATCGACAAAGTGTTCAACTTCAACCGCAACCTGACGGAGCAGATCGACAGCAGCCTGGACCGTATCCGGGTGAACGTGGAGAAAGAGTTCCAGAAGAAAAACAAGCGGAAAAAGGCGAAAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAGGATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCAACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGACCGTGCAGCTTACCGTGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGCCCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCACACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGCCGCATGCCCGAGTCGGGCAATGCGCAGCAGATCGAATGGGAGCCGGTCGGGT ] [+] EMBL BX620233 [ CCCTGCACAGGATATACCCACCGGCACGGTTCGAACTTTGTCCCGAAGCAACGCTTTGCGATGAGAACCGCATANTTCAAACAGCTGCCGGGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCGGTACAAGATCGACAAAGTGTTCAACTTCAACCGCAACCTGACGGAGCAGATCGACAGCAGCCTGGACCGTATCCGGGTGAACGTGGAGAAAGAGTTCCAGAAGAAAAACAAGCGGAAAAAGGCGAAAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAGGATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCAACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGAACGTGCAGCTTACCGTGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGCCCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCACACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGNCGCATGCCCGAGTCGGGCAATGCGCAGCANATCGAATGGGAGCCGGTCGGGTCNGAGCTGTCCTATCTGGTGCAAAANGGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4566#0 AGAATTGCCACGAGGTGTCTGGCGTTGAATACGATCTGATCTGTGCAGCAGCAGTTCCTT 60 consensus_4566#1 ------------------------------------------------------------ consensus_4566#0 CACCCTGGCTCAATGTTGAGTTCGGCCCGTCTGTACGGTAGTGATACGATTGAAAATAAC 120 consensus_4566#1 -------------------------------------------CCGCGATTGAAAACAAC 17 ********** *** consensus_4566#0 CCTCCCGCTGCGTTCGCCGTATCC-TGCACAGGATATACCCACCTGGCACTGGTTCTGAA 179 consensus_4566#1 CCTCCCGCTACGTTCGCCGTATCCCTGCGAAGGATATACCCACC-GGCAC-GGTTC-GAA 74 ********* ************** *** ************** ***** ***** *** consensus_4566#0 CTTTGTCCCTGAAGCAACTGCTTTGCTGATGAGAACCTGCATACTTCAA-CAGCTGCCTG 238 consensus_4566#1 CTTTGTCCC-GAAGCAAC-GCTTTGC-GATGAGAACC-GCCTACTTCAAACAGCTGCC-G 129 ********* ******** ******* ********** ** ******** ******** * consensus_4566#0 GGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCTGGTACAAGATCGACAA 298 consensus_4566#1 GGTGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACC-GGTACAAGATCGACAA 188 ** **************************************** **************** consensus_4566#0 ACGTGTTCAACTTCAACCTGCAACCTGACTGGATGCATGATCTGACAGCAGCCTGGACCT 358 consensus_4566#1 A-GTGTTCAACTTCAACC-GCAACCTGACGGAGCAGAT----CGACAGCAGCCTGGACC- 241 * **************** ********** * ** **************** consensus_4566#0 GTATCCTGGGTGAACNGTGGAGAAAGATGTTCCAGAAGAAAAACAAGCTGGAAAAATGGC 418 consensus_4566#1 GTATCC-GGGTGAACG-TGGAGAAAGA-GTTCCAGAAGAAAAACAAGCGGAAAAAGGCGA 298 ****** ******** ********** ******************** * **** * consensus_4566#0 TGAAAACAAT-----GGCACCCTGCCGTGACCAATGCGACCGAAGGATTGN-GCTGG--- 469 consensus_4566#1 AAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAG 358 ** ** * ** * *** * * ** * * * * *** consensus_4566#0 ---CTGCAGAGT--GAACC--TGCTGGTGGCAAGTGATCTTGCGTGAACCCGGATACCCG 522 consensus_4566#1 GATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCA 418 **** ** * *** ** * *** * * *** *** * ** consensus_4566#0 GTG-GTCCGTGGTC-------CCCTCGAGGCAACNGNGGGAGTGAACGTGC---TTACGC 571 consensus_4566#1 ACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGACCGTGCAGCTTACCG 478 * ** * * * * * ** *** ** ***** **** consensus_4566#0 AAAGNAATGACGAC---CAAATCG--------GNCCCGGAAA--CATGNCNTCTGNCCCA 618 consensus_4566#1 TGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGC 538 * *** *** ***** * ****** **** ** * consensus_4566#0 ANAGCATAAAAGTNGN--ACCACCAC-CCCCNGAAACCGNGTTGCCAAGGCATTTA---A 672 consensus_4566#1 CCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCA 598 * * * * * * * * ** * * ** * ** ** ** * consensus_4566#0 CACCGGGTGGANTTGGGTACT--TGG-CGCGNAGAC-CATATTCACACAAGTTAGGGCCC 728 consensus_4566#1 CACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGCCGCATGCCCGAGTCGGGCAATGCGC 658 ****** * ** ***** *** **** * * *** * * * ** * consensus_4566#0 TACAAACAG---GGACACCGGAAGGGGTTGACNATTGCCGC--GGT-CAAAATGTTTGCG 782 consensus_4566#1 AGCAGATCGAATGGGAGCCGGTCGGGTCNGAGCTGTCCTATCTGGTGCAAAANGGTGA-- 716 ** * * ** **** *** ** * * *** ***** * * consensus_4566#0 NCNNC 787 consensus_4566#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||