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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence
[AACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCAGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAACGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATGCCATCTGTATCAGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAACTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGACTGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCACCCTCAAGTATCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGCCCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACTGTCGGGCTGCAAGCATTGCCGCCTGATCAGCTCGAGCGAGACTGTGCGGGCATCGAGATCTGTCGCAAAGGATGGCACGATCCCAATGTGGATGT]
[+] EMBL BX624940 [AACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCAGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAACGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATGCCATCTGTATCAGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAACTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGACTGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCACCCTCAAGTATCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGCCCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACTGTCGGGCTGCAAGCATTGCCGCCTGATCAGCTCGAGCGAGACTGTGCGGGCATCGAGATCTGTCGCAAAGGATGGCACGATCCCAATGTGGATGT]
[+] EMBL BX621634 [ ACAATACGGTCGTTGGGTTCGTCGTTCTCACCATCCGAATGTCTTGCCTTGGACCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAACAGCAGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAACGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATGCCATCTGTATCCGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAACTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGACTGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCACCCTCAAGTACCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGCCCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACCGTCGGGCTGCAAGCGCTCCCGCCCGATCAGCTCGAGCGAGACTGTGCCGGCATCGAGATCTGTCGCAAAGGATGGCACGATCCGAATGTGGAT ]
consensusID : consensus_4570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[NGCCAAACGAAACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCCAGCTGGTATGTCCCGANNGGGANGCCCTGGCCCAGCATNNGGTNNNGAANCGNGCCCATTCGAAGGCCCCGGGAAAGTTGGCAAACCCCGGTTAACCGGAATGGAAAGTTT]
[+] EMBL BX619097 [NGCCAAACGAAACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCCAGCTGGTATGTCCCGANNGGGANGCCCTGGCCCAGCATNNGGTNNNGAANCGNGCCCATTCGAAGGCCCCGGGAAAGTTGGCAAACCCCGGTTAACCGGAATGGAAAGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4570#0 ----------AACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGA 50
consensus_4570#1 NGCCAAACGAAACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGA 60
**************************************************
consensus_4570#0 ATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAAT 110
consensus_4570#1 ATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAAT 120
************************************************************
consensus_4570#0 GTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCA 170
consensus_4570#1 GTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCA 180
************************************************************
consensus_4570#0 GCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGA 230
consensus_4570#1 GCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGA 240
************************************************************
consensus_4570#0 GGACCAGGACGAGCAGC-AGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAA 289
consensus_4570#1 GGACCAGGACGAGCAGCCAGCTGGTATGTCCCGANNGGGAN---GCC-------CTGGCC 290
***************** ************* * * *** **
consensus_4570#0 CGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATG 349
consensus_4570#1 CAGCATNNGGTNNNGAANCGNGCCCATTCGA--AGGCCCCGGGAAAGTTG---GCAAACC 345
* ** * *** * ** * *** ** *** * * ** * **
consensus_4570#0 CCATCTGTATCAGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAA 409
consensus_4570#1 CCGGTTA-ACCGGAATGGAAAGTTT----------------------------------- 369
** * * * * **** *
consensus_4570#0 CTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGAC 469
consensus_4570#1 ------------------------------------------------------------
consensus_4570#0 TGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCA 529
consensus_4570#1 ------------------------------------------------------------
consensus_4570#0 CCCTCAAGTATCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGC 589
consensus_4570#1 ------------------------------------------------------------
consensus_4570#0 CCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACTGTCGGGCTGCAAG 649
consensus_4570#1 ------------------------------------------------------------
consensus_4570#0 CATTGCCGCCTGATCAGCTCGAGCGAGACTGTGCGGGCATCGAGATCTGTCGCAAAGGAT 709
consensus_4570#1 ------------------------------------------------------------
consensus_4570#0 GGCACGATCCCAATGTGGATGT 731
consensus_4570#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||