These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGACGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGTAACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATACACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGCAAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAAAATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCGAAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGGGACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATACATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTTCGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAAAAA] [+] EMBL CNS091PS [CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGACGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGTAACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATACACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGCAAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAAAATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCGAAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGGGACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAG ] [-] EMBL CNS091PT [ ACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGCAAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAAAATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCGAAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGGGACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATACATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTTCGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAAAAA] consensusID : consensus_4576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [TAAGCGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTTTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGAGTGGGACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTACCATGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACCTTCCCAAAACCTTCGTGTTTCATT] [+] EMBL BX608876 [TAAGCGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTTTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGAGTGGGACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTACCATGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACCTTCCCAAAACCTTCGTGTTTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4576#0 CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGA 60 consensus_4576#1 ------------------------------------------------------------ consensus_4576#0 CGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGT 120 consensus_4576#1 ------------------------------------------------------------ consensus_4576#0 AACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATAC 180 consensus_4576#1 ------------------------------------------------------------ consensus_4576#0 ACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGC 240 consensus_4576#1 ------------------------------------------------------------ consensus_4576#0 AAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAA 300 consensus_4576#1 ------------------------------------------------------------ consensus_4576#0 AATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCG 360 consensus_4576#1 ------------------------------------------------------------ consensus_4576#0 AAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAAC 420 consensus_4576#1 ------------------------------------------TAAGCGAACTTACACAAC 18 *** ************** consensus_4576#0 GCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTG 480 consensus_4576#1 GCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTG 78 ************************************************************ consensus_4576#0 AAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCG 540 consensus_4576#1 AAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCG 138 ************************************************************ consensus_4576#0 CGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCT 600 consensus_4576#1 CGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTTT 198 ********************************************************** * consensus_4576#0 TTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGG 660 consensus_4576#1 TTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGAGTGG 258 ******************************************************** *** consensus_4576#0 GACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAAC 720 consensus_4576#1 GACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAAC 318 ***** ****************************************************** consensus_4576#0 ACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATA 780 consensus_4576#1 ACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTACCA-- 376 ******************************************************* ** consensus_4576#0 CATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTT 840 consensus_4576#1 --TGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACC----------TTCCCAAAACCTT 424 ***************************** ***** ************* consensus_4576#0 CGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAA 900 consensus_4576#1 CGTGTTTCATT------------------------------------------------- 435 *********** consensus_4576#0 AAA 903 consensus_4576#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||