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Anopheles gambiae
cluster # 4587 cluster # 4587       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4587#0 length = 822 sequences # 1  
consensus_4587#1 length = 700 sequences # 1  
consensus_4587#2 length = 558 sequences # 1  

consensusID : consensus_4587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 822
fasta sequence
                              [TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC]

[+] EMBL AL932877             [TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC]


>consensus_4587#0 TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAG TGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTG ATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGT TCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGA AAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAG GACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCG GCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACC CATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGA CTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTG NGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTA TATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACG ATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGG ACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATC CCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC



consensusID : consensus_4587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATGGAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATTCATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG]

[-] EMBL BM619351             [TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATGGAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATTCATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG]


>consensus_4587#1 TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTG TAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGC CAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAAT TCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATG GAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGAT ACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGC TGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATT CATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGT GGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAA CAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTAC TGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTA CTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG



consensusID : consensus_4587#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence
                              [TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGGCCTCCGACACAG]

[+] EMBL AL933385             [TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGGCCTCCGACACAG]


>consensus_4587#2 TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAA ATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACT GCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGC GGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGA AGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACA TTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTAT CTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATA TCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTA AGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTT GTTTGGCCTCCGACACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4587#0      TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAA-TAACTATCGTGGGNGGCCAAATA 59
consensus_4587#2      -------------------TTATCTGCATTTCAAAAATAACTATCGTGGGGG--CCAATA 39
consensus_4587#1      ---------------TAATATG-CGGCAATGCTGGC-TAGTTATTTTCATCA-CCCAATG 42
                                             * *** * *     **  ***  *       * *** 

consensus_4587#0      GTGTGGAAAAAGT--TTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCT 117
consensus_4587#2      GTGTGGTAAAAGT--TTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCT 97
consensus_4587#1      TTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCAT 102
                       * *    *      ***   * ** **   *  ****** *  * *         *  *

consensus_4587#0      GTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATT 177
consensus_4587#2      GTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATT 157
consensus_4587#1      GTTGTGCAAC-AGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTAC 161
                      **  **  *  *** * *  *   *  ** *   ***** **  *   * *  * *    

consensus_4587#0      AGTTCCGGTGTACTGATGATG-CGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAG 236
consensus_4587#2      AGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAG 217
consensus_4587#1      GCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAA--- 218
                        **    **   **    *        *  **  ****   *****  **  ** *   

consensus_4587#0      GAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTT------------- 283
consensus_4587#2      GAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGT 277
consensus_4587#1      -ATACAAATATAGCTGTATGATGGAATA-CAAAAATGATTGTACTTATACACTTTAATTC 276
                       * * ** ** * * *  * *        * ***   *  *  * *              

consensus_4587#0      -------------AAATATG----ACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCAT 326
consensus_4587#2      TTCATGGCACAGTAAATATG----ACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCAT 333
consensus_4587#1      ATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAAT 336
                                      ****    ***    *  *** *      ***     ** * **

consensus_4587#0      TATC----TTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGC 382
consensus_4587#2      TATC----TTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCG-TACGAACAGTGC 388
consensus_4587#1      GAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAA-AC 395
                       *      **  *   **    *  * * **    *  *   *     *    ***   *

consensus_4587#0      TCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTA 442
consensus_4587#2      TCAAAAAGATTGCTATCGATCAGC-TTGTTATATCACCCATCTTCATCGTTACATATTTA 447
consensus_4587#1      GTAAACAAACTTTGCTCGTTC--CATTCATGTAATGCTTATCTT-----TCCGATTTGTT 448
                        *** * * *    *** **  * **  * **   *  *****     *   ** * * 

consensus_4587#0      TACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTAC 502
consensus_4587#2      TACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTAC 507
consensus_4587#1      GAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTG 508
                       *  ***   *  **  * **    **   **  *** *    *    * *    * *  

consensus_4587#0      AAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAAC 562
consensus_4587#2      AAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGG-CCTCCGACACAG-------- 558
consensus_4587#1      AGGAAATAATTGCGATATTCAATTGCATATAACAATCAT-TCTGTGATGAGAGGAGTTTG 567
                      * * * *        *** **   *  *       *     **  **             

consensus_4587#0      TTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGC 622
consensus_4587#2      ------------------------------------------------------------
consensus_4587#1      GAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCAT 627
                                                                                  

consensus_4587#0      GTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATA 682
consensus_4587#2      ------------------------------------------------------------
consensus_4587#1      TGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGAC 687
                                                                                  

consensus_4587#0      ACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACA 742
consensus_4587#2      ------------------------------------------------------------
consensus_4587#1      TTGTCTTTTCCGG----------------------------------------------- 700
                                                                                  

consensus_4587#0      GGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCG 802
consensus_4587#2      ------------------------------------------------------------
consensus_4587#1      ------------------------------------------------------------
                                                                                  

consensus_4587#0      GCGCGCANNTGAGCAGTATC 822
consensus_4587#2      --------------------
consensus_4587#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)