These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence [TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC] [+] EMBL AL932877 [TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC] consensusID : consensus_4587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATGGAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATTCATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG] [-] EMBL BM619351 [TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATGGAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATTCATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG] consensusID : consensus_4587#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGGCCTCCGACACAG] [+] EMBL AL933385 [TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGGCCTCCGACACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4587#0 TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAA-TAACTATCGTGGGNGGCCAAATA 59 consensus_4587#2 -------------------TTATCTGCATTTCAAAAATAACTATCGTGGGGG--CCAATA 39 consensus_4587#1 ---------------TAATATG-CGGCAATGCTGGC-TAGTTATTTTCATCA-CCCAATG 42 * *** * * ** *** * * *** consensus_4587#0 GTGTGGAAAAAGT--TTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCT 117 consensus_4587#2 GTGTGGTAAAAGT--TTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCT 97 consensus_4587#1 TTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCAT 102 * * * *** * ** ** * ****** * * * * * consensus_4587#0 GTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATT 177 consensus_4587#2 GTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATT 157 consensus_4587#1 GTTGTGCAAC-AGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTAC 161 ** ** * *** * * * * ** * ***** ** * * * * * consensus_4587#0 AGTTCCGGTGTACTGATGATG-CGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAG 236 consensus_4587#2 AGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAG 217 consensus_4587#1 GCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAA--- 218 ** ** ** * * ** **** ***** ** ** * consensus_4587#0 GAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTT------------- 283 consensus_4587#2 GAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGT 277 consensus_4587#1 -ATACAAATATAGCTGTATGATGGAATA-CAAAAATGATTGTACTTATACACTTTAATTC 276 * * ** ** * * * * * * *** * * * * consensus_4587#0 -------------AAATATG----ACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCAT 326 consensus_4587#2 TTCATGGCACAGTAAATATG----ACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCAT 333 consensus_4587#1 ATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAAT 336 **** *** * *** * *** ** * ** consensus_4587#0 TATC----TTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGC 382 consensus_4587#2 TATC----TTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCG-TACGAACAGTGC 388 consensus_4587#1 GAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAA-AC 395 * ** * ** * * * ** * * * * *** * consensus_4587#0 TCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTA 442 consensus_4587#2 TCAAAAAGATTGCTATCGATCAGC-TTGTTATATCACCCATCTTCATCGTTACATATTTA 447 consensus_4587#1 GTAAACAAACTTTGCTCGTTC--CATTCATGTAATGCTTATCTT-----TCCGATTTGTT 448 *** * * * *** ** * ** * ** * ***** * ** * * consensus_4587#0 TACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTAC 502 consensus_4587#2 TACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTAC 507 consensus_4587#1 GAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTG 508 * *** * ** * ** ** ** *** * * * * * * consensus_4587#0 AAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAAC 562 consensus_4587#2 AAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGG-CCTCCGACACAG-------- 558 consensus_4587#1 AGGAAATAATTGCGATATTCAATTGCATATAACAATCAT-TCTGTGATGAGAGGAGTTTG 567 * * * * *** ** * * * ** ** consensus_4587#0 TTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGC 622 consensus_4587#2 ------------------------------------------------------------ consensus_4587#1 GAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCAT 627 consensus_4587#0 GTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATA 682 consensus_4587#2 ------------------------------------------------------------ consensus_4587#1 TGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGAC 687 consensus_4587#0 ACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACA 742 consensus_4587#2 ------------------------------------------------------------ consensus_4587#1 TTGTCTTTTCCGG----------------------------------------------- 700 consensus_4587#0 GGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCG 802 consensus_4587#2 ------------------------------------------------------------ consensus_4587#1 ------------------------------------------------------------ consensus_4587#0 GCGCGCANNTGAGCAGTATC 822 consensus_4587#2 -------------------- consensus_4587#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||