These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATCGCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGTGCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC] [+] EMBL BM575070 [CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATCGCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGTGCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC] consensusID : consensus_459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC] [+] EMBL BM648160 [CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_459#0 CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATC 60 consensus_459#1 ------------------------------------------------------------ consensus_459#0 GCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGT 120 consensus_459#1 ------------------------------------------------------------ consensus_459#0 GCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTC 180 consensus_459#1 ---------CCGC--GGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTC 49 **** * ** * ** * ****** *************** consensus_459#0 GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC 240 consensus_459#1 GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC 109 ************************************************************ consensus_459#0 TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA 300 consensus_459#1 TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA 169 ************************************************************ consensus_459#0 AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG 360 consensus_459#1 AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG 229 ************************************************************ consensus_459#0 AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG 420 consensus_459#1 AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG 289 ************************************************************ consensus_459#0 CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG 480 consensus_459#1 CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG 349 ************************************************************ consensus_459#0 CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGC 540 consensus_459#1 CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGC 409 *********************************** ************************ consensus_459#0 GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC 600 consensus_459#1 GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC 469 ************************************************************ consensus_459#0 GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC 660 consensus_459#1 GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC 529 ************************************************************ consensus_459#0 CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC--------- 711 consensus_459#1 CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCA 589 ************************************* ************* consensus_459#0 ------------------------------------------------------------ consensus_459#1 ACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCG 649 consensus_459#0 -------------------------------------------------------- consensus_459#1 ACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC 705 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||