These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1185 fasta sequence [CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGCATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCACGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGTGGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGCTTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCTCTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTTGGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGAAACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCTTTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTGTTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAGTGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTCCTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATAGACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACACCGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGCGGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCAGTGATGGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTACTATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAAACTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT] [+] EMBL BM654047 [CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGCATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCACGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGTGGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGCTTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCTCTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTTGGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGAAACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCTTTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTGTTTATGCTTATGTCTGACGGTCATGC ] [+] EMBL BX614648 [ ATCCCAGAATCTTGTTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAGTGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTCCTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATAGACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACACCGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGCGGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCAGTGATGGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTACTATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAAACTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT] consensusID : consensus_4597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [AGGCAGAATCGCGCACGAGGTNAAAAAAAACAAAACCTACACACCCAAACCAAGGTACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACGAGATAGGGAGAGCGAGCGAGCGCAATGAATGAAAACATCCCAGCAGACACAAAATGCAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATAATAATAATATGAATAATAAAGAAAAAAAAATATATTGAAAGGTAATTATAATTAATGCAA] [+] EMBL BX468801 [AGGCAGAATCGCGCACGAGGTNAAAAAAAACAAAACCTACACACCCAAACCAAGGTACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACGAGATAGGGAGAGCGAGCGAGCGCAATGAATGAAAACATCCCAGCAGACACAAAATGCAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATAATAATAATATGAATAATAAAGAAAAAAAAATATATTGAAAGGTAATTATAATTAATGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4597#0 CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGC 60 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 ATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCA 120 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 CGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGT 180 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 GGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGC 240 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCT 300 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 CTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTT 360 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 GGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGA 420 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 AACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCT 480 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTG 540 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAG 600 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTC 660 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 CTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATA 720 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 GACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACAC 780 consensus_4597#1 ---------------------------------AGGCAGAATCGCGCACGAGGTNAAAAA 27 * * **** * * * consensus_4597#0 CGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGC 840 consensus_4597#1 AAACAAAACCTACACACCCAAACCAAGGTACGGAGAAAACTAGCAGCAAACACACAAAAT 87 * * ** **** ** * ** * ** ** ** ** *** consensus_4597#0 GGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCA 900 consensus_4597#1 TGGAATGAAAAAAAATA-------AAATA---CTTTAATTGATAAGATAAAGCGAGCGAC 137 **** ********* * * *** ******** **** * **** * consensus_4597#0 GTGAT-GGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTA 959 consensus_4597#1 GAGATAGGGAGAGCGA-GCGAGCGCAATGAATGAAAACATC--CCAGCAGACACAAAATG 194 * *** ********** * *** ** * *** * * * * * ** * consensus_4597#0 CTATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAA 1019 consensus_4597#1 CAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATA----ATAATAATATGAAT 250 * * * *** ** *** ****** * *** ** * ******* ** consensus_4597#0 ACTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGA 1079 consensus_4597#1 AATAAAGAAAAAAAAATATATTGA--AAGGTAATTATAATTAATGCAA------------ 296 * * * ** * * * *** ** ** * ** * ** consensus_4597#0 CGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATT 1139 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 GATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT 1185 consensus_4597#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||